Research Article |
Corresponding author: Elizabeth M. Oishi ( eoishi@sfu.ca ) Academic editor: Jaimie T.A. Dick
© 2024 Elizabeth M. Oishi, Kiara R. Kattler, Hannah V. Watkins, Brett R. Howard, Isabelle M. Côté.
This is an open access article distributed under the terms of the CC0 Public Domain Dedication.
Citation:
Oishi EM, Kattler KR, Watkins HV, Howard BR, Côté IM (2024) Substrate complexity reduces prey consumption in functional response experiments: Implications for extrapolating to the wild. NeoBiota 91: 49-66. https://doi.org/10.3897/neobiota.91.111222
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Understanding the density-dependent impacts of an invasive predator is integral for predicting potential consequences for prey populations. Functional response experiments are used to assess the rate of prey consumption and a predator’s ability to search for and consume prey at different resource densities. However, results can be highly context-dependent, limiting their extrapolation to natural ecosystems. Here, we examined how simulated habitat complexity, through the addition of substrate in which prey can escape predation, affects the functional response of invasive European green crabs (Carcinus maenas) foraging on two different bivalve species. Green crabs feeding on varnish clams (Nuttallia obscurata) shifted from a Type II hyperbolic functional response in the absence of substrate to density-independent consumption when prey could bury. Green crabs ate few Japanese littleneck clams (Venerupis philippinarum) under all densities, such that no functional response curve of any type could be produced and their total consumption was always density independent. However, the probability of at least one Japanese littleneck clam being consumed increased significantly with initial clam density and crab claw size across all treatments. At mean crab claw size and compared to trials without substrate, the proportion of varnish clams consumed were 4.2 times smaller when substrate was present, but substrate had a negligible effect (1.2 times) on Japanese littlenecks. The proportion of varnish clams consumed increased with crab claw size and were higher across both substrate conditions than the proportion of Japanese littlenecks consumed; however, the proportion of Japanese littleneck clams consumed increased faster with claw size than that of varnish clams. Our results suggest that including environmental features and variation in prey species can influence the density-dependent foraging described by functional response experiments. Incorporating replicable features of the natural environment into functional response experiments is imperative to make more accurate predictions about the impact of invasive predators on prey populations.
Decapods, density-dependent predation, environmental complexity, invasive species, marine, non-native
Owing to new introductions and ever-expanding ranges, invasive species have significant negative impacts on the biodiversity (
The population density of an invader is important for estimating its potential impact and the resulting consequences for the environment (
Functional response experiments, like many laboratory experiments, are by nature simplified representations of complex systems. They typically remove many of the biotic and environmental variables that may influence consumption rates, increasing the comparability of findings within and between species (
Functional response experiments have been used to evaluate the predatory behaviour and potential impacts of the European green crab (Carcinus maenas, Linnaeus, 1758) (e.g.
In this study, we aimed to examine how the FR of invasive green crab foraging on bivalve species may change when prey are provided with habitat that mimics their natural environment. More specifically, we provided substratum in which bivalve prey could bury, thereby potentially increasing green crab handling time and decreasing their attack rate and maximum prey consumption when compared to FREs conducted without substrate. We also examined the effect of prey species characteristics that can impact susceptibility to predation, i.e. morphological characteristics and burial depths, in these two substrate conditions. We expected that the different burying depths of the two clam species used might give rise to a reversal in prey profitability that foraging crabs would experience in the wild, but may not be realised in typical FREs. Increasing search time in a FRE could alter predictions of the magnitude of impact invasive predators have on prey populations.
Male European green crabs were collected from Bedwell Bay (49°18.55'N, 125°48.29'W) near Tofino on the west coast of Vancouver Island, British Columbia (BC), Canada, in June 2022. Crabs without evidence of moulting, free from epibionts, with a notch-to-notch carapace width of 55 to 76 mm and with both chelipeds present, were used in our experiment. We collected only males to reduce the risk of invasion via the release of fertilised eggs at the experimental facility. Varnish clams (Nuttallia obscurata Reeve, 1857) were collected from Robbers Passage (48°53.77'N, 125°7.25'W) in Barkley Sound, also on the west coast of Vancouver Island, while Japanese littleneck clams (Venerupis philippinarum A. Adams & Reeve, 1850) were collected from Nanoose Bay (49°15.53'N, 124°10.99'W), on the east coast of Vancouver Island. We collected clams with undamaged shells and measuring 21–40 mm in length (i.e. anterior to posterior shell margins).
Both prey species are not native to BC, but their high abundance in soft-bottom habitats throughout the region results in a high likelihood of encounters between these invasive prey and green crabs (
All animals were held at the Bamfield Marine Science Centre, on the west coast of Vancouver Island, in indoor sea tables (172 cm long × 75 cm wide × 16 cm deep) with flow-through, unfiltered seawater (10 °C ± 0.33 °C). The animals were held under artificial lighting that mimicked natural day-night cycles. Crabs were held at low densities (~20 crabs per sea table) with ample habitat including flowerpots, rocks, PVC pipes and seaweed. Crabs were fed thawed salmon pieces every four days. Clams were fed algae and Phytofeast every three days.
Trials were conducted in opaque plastic enclosures (61 cm × 41 cm × 42 cm), which were all supplied with natural seawater flowing at equal rates. Each replicate consisted of 12 treatment combinations: two substrate treatments (enclosures with or without substrate) at each of six clam densities (1, 2, 4, 6, 10 or 16 individuals per enclosure). We placed Quikrete® premium play sand on the bottom to a depth of 20 cm in each with-substrate enclosure and left the bottom of the no-substrate enclosures bare. We chose to use play sand instead of natural substrate to avoid variability introduced by grain size, the possible presence of invertebrates and/or variation in oxygen levels in natural substrate. Sand was washed thoroughly before use and the seawater used in the experimental enclosures was changed and all visible detritus removed between trials. Each trial included a single clam species; there were no mixed-species trials. All 12 treatment combinations were replicated six times each for both varnish clams and Japanese littleneck clams (for a total of 144 trials). Each replicate was run over two days between 25 June and 9 July 2022. Clam density by substrate level combinations were randomly assigned to each enclosure using a random number generator. Clams were scattered in the enclosures 12 h prior to the start of each replicate and were only used once, even if they were not consumed. Each trial commenced with the introduction of a single, randomly-assigned crab. Prior to trials, we isolated and withheld food from green crabs for 48 h to standardise hunger levels (
At the end of each trial, crabs were removed and the number and size of clams consumed were recorded. Finally, we ran a control replicate to test for clam survival independent of predation. Temperature and salinity were measured at the start and end of each trial using a thermometer (Fisherbrandtm 76 mm immersion thermometer) and refractometer (Tropic Eden PRO-1 normal seawater refractometer), respectively.
We ran a burial experiment to determine the average burial depth of both clam species. We glued a graduated length of monofilament fishing line to the umbo of 15 clams of each species and allowed them to bury in identical substrate conditions as the FR experiment for 12 h. After 12 h, we measured each line from the umbo of the clam to the point where the line emerged from the sand.
For each treatment combination, we attempted to fit a functional response curve to the proportion of prey eaten in relation to prey density using the R package ‘frair’ (frair:frair_test) (
Ne = N0 (1 – exp(a (Ne h – T)))
where Ne is the number of prey eaten, N0 is the starting prey density, a is the predator’s attack rate, h is the handling time and T is the length of the experiment. Ne and N0 were determined by each individual trial, while a and h were estimated from the logistic regression model. We then used frair:frair_boot non-parametric stratified bootstrapping (n = 2000 iterations) to generate a 95% confidence interval for each parameter estimate of the model. We used a bias-corrected and accelerated bootstrap interval (upper and lower BCa) to correct for any biases or skewed distributions in the bootstrapped model. There was no evidence of a functional response for any of the other treatment combinations (i.e. none of the terms was significant for the initial logistic regression), so we therefore did not generate FR equations and the associated parameters (see Results).
As the logistic regression used by the ‘frair_test’ did not produce any significant density terms for three of our treatment combinations, we used an additional approach to understand the role of substrate presence in green crab foraging by considering other possible explanatory variables in addition to prey density. We first ran a separate logistic regression (generalised linear model with a binomial distribution and logit link function) to examine the probability that a crab consumed a clam in relation to cheliped height, initial clam density and substrate presence, as well as interactions between clam species and substrate presence/absence and between clam species and cheliped height. However, complete separation (i.e. one variable perfectly predicts another variable) occurred in the model for varnish clams in the absence of substrate treatment. This was caused by every crab consuming at least one varnish clam in every no-substrate trial. Therefore, we incorporated bias reduction through a maximum penalised likelihood for our observations where penalisation was done using Jeffreys invariant prior (
We then used a second logistic regression (generalised linear model with a binomial distribution and logit link function) to assess the proportion of clams consumed in a trial in relation to the same variables and interactions as the previous model. In both models, the interaction between clam species and substrate presence/absence was included to reveal the potential trade-off between attack rate and handling time generated by the different burial depths of the two clam species (
There was no mortality for either varnish clams or Japanese littleneck clams in substrate and non-substrate trials when in enclosures without green crabs. Therefore, all mortality observed in the experiment was assumed to be due to green crab predation. All clams were able to bury themselves before the start of each trial. Varnish clams buried significantly deeper (mean ± 1 SE: 8.98 ± 0.48 cm, range: 6.2–11.6 cm) than Japanese littleneck clams (4.15 ± 0.29, 2.3–6.2 cm) (coefficient = 4.83, p < 0.001, Suppl. material
The lengths of varnish clams consumed ranged from 25 to 40 mm (mean ± 1 SE: 31.09 ± 0.30 mm), while Japanese littleneck clams that were consumed ranged from 21 to 30 mm (mean ± 1 SE: 26.79 ± 0.35 mm). There was no significant difference between the sizes of varnish clams that were or were not consumed, irrespective of substrate presence (post-hoc pairwise contrasts not consumed vs. consumed, with substrate: estimate = -0.47, t691 = -0.94, p = 0.35; without substrate: estimate = -0.19, t691 = -0.43, p = 0.67; Suppl. material
Green crabs feeding on varnish clams in the absence of substrate exhibited a Type II hyperbolic FR, with a corresponding significant negative first-order density term (z = -4.57, p < 0.001, Fig.
Functional response curve of green crab feeding on varnish clams in the absence of substrate. The triangles show the mean number of varnish clams consumed as a function of initial clam density (1, 2, 4, 6, 12 or 16 per trial). The Type II FR curve is represented by the dashed line with the bootstrapped 95% confidence interval represented by the shaded ribbon.
Parameter estimates for green crabs feeding on varnish clams in the absence of substrate. The parameter estimates, attack rate (a) and handling time (h), were derived from a Rogers Type II functional response curve. BCa CI represents the bootstrapped accelerated bias-corrected 95% confidence intervals.
Parameter | Estimate | SE | BCa CI | z | p |
---|---|---|---|---|---|
Attack rate (a) | 2.89 | 0.77 | 1.72–5.59 | 3.74 | < 0.01 |
Handling time (h) | 0.12 | 0.02 | 0.06–0.17 | 5.79 | < 0.01 |
The probability of an individual clam being consumed increased with cheliped height and initial clam density across all treatment combinations considered (Table
Probability of a green crab consuming a clam as a function of initial clam density. Lines represent model predictions for each treatment combination (varnish clams or Japanese littleneck clam in the presence or absence of substrate) during a trial in relation to initial clam density and ribbons represent 95% confidence intervals. Data points represented individual crabs (n = 36 for each density x substrate treatment).
Results of a generalised linear model (GLM) with bias reduction, binomial distribution and logit link function examining the effect of various factors on the probability that a green crabs would consume at least one clam during a trial. Substrate refers to the presence or absence of substrate in an enclosure, initial clam densities were 1, 2, 4, 6, 12 or 16 clams and clam species included varnish clams or Japanese littleneck clams. The baseline factor levels for the model are Japanese littleneck clams in the absence of substrate (n = 144 trials).
Factor | Estimate | SE | z | p |
---|---|---|---|---|
Intercept | -6.91 | 1.79 | -3.86 | < 0.001 |
Cheliped height | 0.24 | 0.083 | 2.95 | 0.003 |
Initial clam density | 0.19 | 0.049 | 3.88 | < 0.001 |
Clam species | 6.48 | 3.37 | 1.93 | 0.05 |
Substrate | -0.096 | 0.62 | -0.16 | 0.87 |
Clam species × substrate | -5.93 | 1.73 | -3.43 | < 0.001 |
Clam species × cheliped height | -0.015 | 0.18 | -0.085 | 0.99 |
Crab cheliped height, clam species and the interactions between clam species and substrate presence and between clam species and cheliped height all had a significant effect on the proportion of clams consumed during a trial (Table
Proportion of varnish clams or consumed in relation to green crab cheliped height (mm). Lines represent model predictions for each treatment combination (varnish clams or Japanese littleneck clam in the presence or absence of substrate) and ribbons represent 95% confidence intervals. Data points represented individual crabs (n = 36 for each density x substrate treatment).
Results of a generalised linear model (GLM) with a binomial distribution and logit link function examining the effect of various factors on the proportion of clams consumed during a trial as a function of green crab cheliped height. Substrate refers to the presence or absence of sand in an enclosure, initial clam densities were 1, 2, 4, 6, 12 or 16 clams and clam species included varnish clams or Japanese littleneck clams. The baseline factor levels for the model are Japanese littleneck clams in the absence of substrate (n = 144 trials).
Factor | Estimate | SE | z | p |
---|---|---|---|---|
Intercept | -5.81 | 1.051 | -5.53 | < 0.001 |
Cheliped height | 0.19 | 0.049 | 3.87 | < 0.001 |
Initial clam density | -0.0305 | 0.018 | -1.66 | 0.10 |
Clam species | 6.11 | 1.26 | 4.84 | < 0.001 |
Substrate | -1.15 | 0.36 | -0.42 | 0.67 |
Clam species × substrate | -2.13 | 0.43 | -4.92 | < 0.001 |
Clam species × cheliped height | -0.17 | 0.064 | -2.62 | 0.009 |
European green crabs did not always forage on clams in the density-dependent manner described by functional responses. Green crabs feeding on varnish clams in the absence of substrate consumed prey in every trial and exhibited a Type II hyperbolic FR, indicating a potentially destabilising effect on this prey species at low densities. However, green crabs in the other three treatment combinations (varnish clams in substrate and Japanese littleneck clams with and without substrate) consumed too few clams to exhibit a significant density term to support a density-dependent Type II or III response. The probability of a crab consuming at least one prey increased with prey density and crab crusher claw size and prey species interacted with substrate condition. A lower proportion of varnish clams were consumed in trials with than without substrate, but no difference was detected for Japanese littleneck clams. Our findings suggest that the results of FREs and, hence, the conclusions drawn about the potential effect of predators on wild populations, are heavily influenced by their experimental simplicity.
We had originally expected that the addition of substrate in our experiments would alter the shape and/or asymptotes of the resulting FR curves. More specifically, we had predicted that search time and handling time might increase and maximum prey consumption might decrease, when substrate was present. We had also expected that adding substrate might reverse the profitability of the two clam species due to their contrasting features (i.e. differences shell thickness and burial depth) (
Density-dependent foraging still occurred in the three treatment combinations where functional responses were not supported. For varnish clams in the presence of substrate and Japanese littleneck clams in both substrate conditions, the probability of a green crab consuming a clam increased significantly with both prey density and crab cheliped height. In general, the more abundant the prey, the higher the likelihood of a prey encounter, even when prey are concealed (
The drivers of the proportions of clams consumed support our interpretation of the previous results. While cheliped height did not determine the probability of a crab consuming a clam, the proportion of clams eaten increased with cheliped height, as expected (
We expect that the relatively low temperature of our experiments contributed to some of the low consumption rates observed, particularly if thermal effects on foraging are prey-specific (e.g. more important when more crushing force is required). It is well documented that European green crabs consume more prey as temperatures increase (
Our findings suggest that the addition of complexity, in the form of substrate in which prey can conceal themselves, as well as variation in prey species characteristics, can alter the predictions stemming from FREs about the ecological impacts of an invasive marine predator. We observed a transition from a strongly density-dependent to a density-independent consumer-prey relationship with the addition of substrate, at least for a preferred prey. The switch in dependence occurred when preferred prey, varnish clams, were allowed to implement a defence mechanism (i.e. burying) that they would naturally rely on, which lowered green crab consumption considerably. A key question arising from our study is whether the foraging behaviour of all consumers is similarly altered by complexity and prey variability. The answer is important because the predictions of impacts made by FREs are sometimes used when comparing consumer species (invasive vs. invasive or invasive vs. native) to gauge their potential relative impacts (
The code and data underpinning the analyses reported in this paper are deposited on Github at https://github.com/elizabethoishi/green-crab-functional-response.
Funding was provided by a grant from the Natural Sciences and Engineering Council of Canada to IMC. The authors have declared that no competing interests exist. Experiments were conducted and animals were handled according to Fisheries and Oceans Canada and Bamfield Marine Science Centre animal care and transportation guidelines. Thank you to D’Arcy Oishi, Claire Attridge, Andrew Bickell, Kieran Cox, Rich Hildebrandt, Dave Kattler, Em Lim, Bridget Maher, Melissa Ochotsky, Manon Picard and Francis Juanes for helping with clam collection. Thank you to Crysta Stubbs and the Clayoquot Sound European green crab trapping team from the Coastal Restoration Society who shared green crabs for this study. Crabs were collected from within the traditional territorial waters of the Ahousaht and Tla-o-qui-aht First Nations as part of the South Coast European Green Crab Control Project - a collaborative effort between the Coastal Restoration Society, the Ahousaht First Nation (Maaqutusiis Hahoulthee Stewardship Society), the Tla-o-qui-aht First Nation, the T’Sou-ke First Nation and the Department of Fisheries and Oceans Canada. We would also like to acknowledge the staff at the Bamfield Marine Sciences Centre and Alexa Fraser for their assistance with animal care and the operation of the lab where this experiment was conducted.
Supplementary data
Data type: docx
Explanation note: figures for the burial depths of varnish clams and Japanese littleneck clams in substrate, lengths of clams that were or were not consumed by a green crab for each treatment combination, and number of varnish clams and Japanese littleneck clams consumed by green crabs with consumption rates as a function of initial clam density (1, 2, 4, 6, 12, 16) for each treatment combination.