Research Article |
Corresponding author: Andre A. Padial ( aapadial@gmail.com ) Academic editor: Jonathan M. Jeschke
© 2025 Lorraine L. Cavalcante, Thiago V. T. Occhi, Julian D. Olden, Andre A. Padial.
This is an open access article distributed under the terms of the CC0 Public Domain Dedication.
Citation:
Cavalcante LL, Occhi TVT, Olden JD, Padial AA (2025) Non-native species drive the global loss of freshwater fish beta-diversity. NeoBiota 97: 257-277. https://doi.org/10.3897/neobiota.97.126607
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Freshwater ecosystems are facing mounting challenges. The widespread introduction of non-native species, for example, has resulted in the loss of native species and the substantial reconfiguration of diversity patterns across regions. Documenting such impacts remains critical for informing national-level biosecurity policies. Here, we explore changes in biogeographic patterns in freshwater fish diversity in response to the spread of non-native species, teasing apart the geographic (watersheds) and taxonomic (species) drivers of patterns at the global scale. We leveraged global databases of fish species occurrence to estimate the unique contributions of local watersheds and species (native and non-native origin) to beta-diversity for biogeographic domains. Beta-diversity metrics of watersheds and species at a domain scale can be interpreted as their importance for the uniqueness in freshwater fish composition. We report significant changes in freshwater fish beta-diversity in response to non-native species, with the largest impacts in the Ethiopian, Nearctic and Palearctic domains, even though non-natives decreased the contribution of watersheds to beta-diversity in all domains, particularly in watersheds with known impacts. Watersheds identified as most important for promoting beta-diversity were not evenly distributed across domains, were influenced by geographical isolation and their unique compositions were composed of many endemic and threatened species. Highest values of species contributions to enhancing beta-diversity were mainly observed for native and threatened species, although mean values of species contributions were higher for non-threatened species. Species from the most important watersheds had wide ecological tolerances, were, in general, natives, endemics and/or with IUCN threat status. Our findings underscore the widespread consequences of non-native species for shaping biogeographic patterns of freshwater fishes in the Anthropocene.
Beta diversity, biodiversity conservation, biogeographic domain, biotic homogenisation, exotic species
Limitations on dispersal ability have produced the interesting phenomenon that many, perhaps even most, species do not occupy all the areas of the world in which they could survive (
The regional connectivity of the world is stronger and more varied than ever before. In this sense, human-induced biological invasions have been growing in the last centuries and there is no indication that rates are decreasing to a saturation level (
The impacts of non-native species introductions are truly global in scale (
The Emergency Recovery Plan required to “bend the curve” in freshwater biodiversity loss explicitly calls for a renewed focus on preventing the impacts of non-native species (
Here, we sought to disentangle the roles of native and non-native species in shaping contemporary patterns of freshwater fish beta-diversity across biogeographic domains of the world. We identify and map watersheds that remain strongholds in enhancing fish beta-diversity and determine those species contributing the most to these patterns. By elucidating the pattern and drivers of changes in freshwater fish beta-diversity, we aim to provide information for national and international policies and conservation strategies that seek to preserve the uniqueness of the world’s fish fauna in the light of ongoing species introductions.
The compositional data by river watershed in the biogeographic domains were obtained from the ichthyofauna database published by
Watersheds were differentiated by exorheic (watersheds having an estuary with an outlet to the sea or ocean) and endorheic (watersheds not having an outlet to the sea or ocean). Species origin was confirmed according to the Global Invasive Species Database – GISD (
Beta-diversity (β) – a measure of the amount of change in species composition from one location to another (
SCBD values represent the relative contribution of species in the study area, interpreted here as the relative contribution of fish species to the total beta-diversity of each biogeographic domain. LCBD values indicate the uniqueness of the river watersheds (sampling units) in terms of the fish composition for each biogeographic domain. In a conservation perspective, species with high SCBD in the domain are those that mostly contribute to compositional variation amongst watersheds and should be prioritised in conservation efforts; and watersheds with high LCBD are those harbouring unique freshwater fish composition, being thus central to mitigate biotic homogenisation amongst watersheds.
Watershed contributions to beta-diversity (LCBD) were mapped across the world according to species of all origin (native and non-native) to represent the “present-day” time-period and according to native species only to represent the “historical” time-period prior to non-native species introductions. In addition, the classification of native and non-native has a time limitation, as information prior to 1850 is difficult to secure. The change in LCBD was due to the introduction of non-native species (ΔLCBD = LCBDpresent – LCBDhistorical). Positive ΔLCBD values indicate watersheds that have maintained or increased their contribution to beta-diversity in the present-day, whereas negative values indicate watersheds with decreasing contributions due to non-native species introductions. Next, we investigated the relationship between LCBD (and ΔLCBD) and the proportional richness of non-native species. Our expectation is that highly-invaded watersheds will exhibit LCBD decreases over time. We thus used a local polynomial regression fitting method (see
SCBD were calculated (and standardised as described for LCBD) for all species in each domain and related to relative species occupancy (%) calculated as the percentage of watersheds occupied by species, using local polynomial regression fitting method (
The complete database of SCBD values for all species, as well as their occupancy and origin (native or non-native) in the domains and the IUCN threat status (if available) is provided as Suppl. material
Watersheds displayed marked variability in their contributions to fish beta-diversity, with these contributions changing in response to the inclusion of non-native species. We depicted historical LCBD in the left panels, where high values indicate basins with a unique freshwater composition and changes in LCBD due to non-native species in the right panels, with negative values indicating biotic homogenisation and positive values indicating differentiation (Fig.
Maps for each biogeographical domain showing the local contribution to beta-diversity (LCBD) of watersheds with non-natives and the decrease in LCBD due to non-native species (Change = LCBD with non-natives – LCBD without non-natives) A LCBD – Australian B LCBD change – Australian C LCBD – Ethiopian D LCBD change – Ethiopian E LCBD – Nearctic F LCBD change – Nearctic G LCBD – Neotropical H LCBD change – Neotropical I LCBD – Palearctic J LCBD change – Palearctic K LCBD – Sino Oriental L LCBD change – Sino Oriental. Values were standardised per biogeographic domain for better comparisons amongst them.
The relationship between the LCBD with and without non-native species is available for all domains in Fig.
Relationship between standardised values of local contribution to beta-diversity (LCBD) with and without non-native species in each biogeographic domain. The size of the symbols indicates the proportion of non-native species and the colours indicate the domain. The red dashed line indicates the expected line of no change in LCBD. Graphs for each domain are available in Suppl. material
By looking at the LCBD changes across domains, only the Australian domain did not have a clear negative relationship between changes in LCBD after removing non-native species and the proportion of non-natives, but the other domains do (Fig.
Changes in standardised values of local contribution to beta-diversity (LCBD change) considering values calculated with minus without non-native species against the proportion of non-native species (percentages) from each biogeographic domain. Curves indicate the best fit (grey areas are the standard errors) according to a local polynomial regression fitting method. R-squared were the following for each domain: Australian (28.4%); Ethiopian (40.0%); Nearctic (71.5%); Neotropical (47.6%); Palearctic (54.3%); Sino.Oriental (54.1%).
Watershed species richness demonstrated weak associations with watershed contributions to beta-diversity (LCBD) (Fig.
Relationship between standardised values of the local contribution of beta-diversity (LCBD) and species richness in the watersheds for each freshwater biogeographic domain (first six graphs). The horizontal red dashed line indicates the median value, so watersheds above it are the most important for species composition according to LCBD. Watersheds with the highest species richness were identified. Lower graph: means and standard deviations of the standardised LCBD for endorheic (black) and exorheic (grey) watersheds in the different biogeographic domains.
Although much less common worldwide (161 watersheds out of 2,760), endorheic watersheds had significantly higher LCBD (Fig.
In general, SCDB values increased with occupancy (Fig.
Upper middle: relationship between standardised values of species contribution to beta-diversity (SCBD) and relative species occupancy, estimated as the percentage of watersheds in which the species occur for biogeographic domains to which it belongs (R-squared to polynomial regressions = 51.6%). Values were standardised for each domain separately. Colours indicate standardised SCBD values for species in different biogeographic domains, red dots highlight the non-native species in biogeographic domains and blue lines indicate the best-fit curve (grey areas are the standard errors) using the local polynomial regression fitting method. Relationships for each biogeographic domain are available in the Suppl. material
Native species always had the top five highest absolute SCBD values in all domains (Suppl. material
Some patterns emerged amongst the top five species with the highest SCBD in each of these six domains: the majority of species were Euryaline, even though most species from the database live in freshwater or only tolerate estuaries (16 out of 30 species, 53.3%); a high prevalence of demersal or benthopelagic species (27 out of 30, 90.0%) and species with some migrating behaviour (18 out of 30, 60.0%); and five species (16.7%) having some reported IUCN vulnerability (three Endangered and two Near Threatened, see Suppl. material
Introductions by non-native species have fundamentally altered the global biogeography of freshwater fishes. This study demonstrates marked taxonomic and geographic differences in contributions to fish beta-diversity patterns of biogeographic domains. Our results have important implications for national and international conservation initiatives that seek to preserve the uniqueness of the world’s fish fauna.
We demonstrated a highly variable effect of non-native species on global-scale biogeographic patterns of freshwater fish. Despite this variability, in general, we found with increasing non-native species dominance comes greater reduction in LCBD and this effect occurred mainly in the domains with known human impacts (
It was clear that the Ethiopian, Nearctic, Palearctic and Sino Oriental are the domains in which the beta diversities of watersheds were mostly changed due to non-native species. Even so, we raised concerns in the Neotropical domain, given the watersheds with higher decreases in beta-diversity due to invasions were also those with higher importance for beta-diversity (see Fig.
LCBD has been used as an important indicator of ecosystem uniqueness considering species composition (
Endorheic watersheds are expected to be more unique and, at the same time, more susceptible to global changes due to their higher physical isolation and consequently high rates of species replacement and endemism (
The species-rich watersheds in biogeographic domains did not have the highest LCBD values, but some had above-average values. The high LCBD and species-rich watersheds are also endorheic in the Ethiopian domain: the ancestral lakes Victoria, Tanganyika and Malawi, all with a high level of cichlid endemism (
The contribution of watersheds to freshwater beta-diversity is just one of many important metrics to consider with respect to prioritising conservation action. For the Ethiopian domain, the two watersheds with the highest LCBD were characterised by endangered and endemic species, but the watershed with the highest species richness had a below-average LCBD: the Congo River watershed. The Congo River watershed has a relatively low percentage of non-natives and is less impacted than other watersheds of similar richness (
Another watershed that is highly biologically diverse, but not unique considering LCBD is the Danube watershed in the Palearctic. This river has a long history of anthropogenic pressure and is a conservation priority due to pollution, land use, urbanisation, alteration of the hydrological regime and the introduction of species; which has resulted in the disappearance of many native species (
More than focusing on watersheds, we also shed light on the most important species contributing to beta-diversity in each domain. As expected, SCBD generally increases with regional occupancy (
The loss of species with the largest contributions to beta-diversity is, thus, most likely to promote biotic homogenisation (
Another interesting view on the most important species considering their SCBD is the diversity of orders. Amongst the 30 most important species for the different domains, there were 13 different orders, which reinforces the context-dependence of freshwater fish diversity and origin (see
Here, we interpret high SCBD values as a proxy of the relative importance of species to beta-diversity (sensu
Distributions of non-native species are closely linked with human activities (
We are greatly thankful to Dr. Boris Leroy and Dr. Ali Serhan Tarkan for thoughtful reviews of a previous version of the manuscript, and also for helping us on providing new data and guidance for analyses.
The authors have declared that no competing interests exist.
No ethical statement was reported.
The first author acknowledges the support of the ‘Coordenação de Aperfeiçoamento de Pessoal de Nível Superior’ (CAPES), Funding Code 001. A.A.P. also acknowledges the ‘Conselho Nacional para o Desenvolvimento Científico e Tecnológico’ (CNP) for continuous financial sup-port (Process Number for current funding: 308648/2021-8).
Lorraine L. Cavalcante – conceptualization, data analysis, writing. Thiago V. T. Occhi – conceptualization, editing. Julian D. Olden – editing, writing. Andre A. Padial – conceptualization, data analysis, writing.
Lorraine L. Cavalcante https://orcid.org/0000-0001-7893-0804
Thiago V. T. Occhi https://orcid.org/0000-0001-9746-4941
Julian D. Olden https://orcid.org/0000-0003-2143-1187
Andre A. Padial https://orcid.org/0000-0002-8766-5974
The organised data used for all analyses are available as Supporting Information and were obtained from freely available global databases.
Supporting information
Data type: zip
Explanation note: 1) LCBD-Cavalcante_et_al-Available.csv 2) SCBD-Cavalcante_et_al-Available.csv 3) Occurrence_Data.csv 4) Relationship between standardised values of local contribution to beta-diversity (LCBD) with and without non-native species in each biogeographic domain 5) Relationship between species contribution to beta-diversity (SCBD) and relative species occupancy, estimated as the percentage of watersheds in which the species occur for the different biogeographic domains 6) Means and standard deviations of standardised values of species contribution to beta-diversity (SCBD) for all IUCN threat categories for each domain separately and for all domains together 7) Watersheds (according to