Research Article |
Corresponding author: M. Pilar Cabezas ( pilarcabezas@cibio.up.pt ) Academic editor: Adam Petrusek
© 2019 M. Pilar Cabezas, Macarena Ros, António Múrias dos Santos, Gemma Martínez-Laiz, Raquel Xavier, Lou Montelli, Razy Hoffman, Abir Fersi, Jean Claude Dauvin, José Manuel Guerra-García.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Cabezas MP, Ros M, Santos AM, Martínez-Laiz G, Xavier R, Montelli L, Hoffman R, Fersi A, Dauvin JC, Guerra-García JM (2019) Unravelling the origin and introduction pattern of the tropical species Paracaprella pusilla Mayer, 1890 (Crustacea, Amphipoda, Caprellidae) in temperate European waters: first molecular insights from a spatial and temporal perspective. NeoBiota 47: 43-80. https://doi.org/10.3897/neobiota.47.32408
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Paracaprella pusilla Mayer, 1890 is a tropical caprellid species recently introduced to the Eastern Atlantic coast of the Iberian Peninsula and the Mediterranean Sea. In this study, we used direct sequencing of mitochondrial (COI and 16S) and nuclear (28S and ITS) genes to compare genetic differences in presumed native and introduced populations in order to infer its introduction pattern and to shed light on the native range of this species. The temporal pattern of genetic diversity at the westernmost limit of the geographic range of P. pusilla in Europe (the Atlantic coast of southern Spain) over an eight-year period was also investigated. Our results confirm P. pusilla as a neocosmopolitan species and suggest that the species is native to the Atlantic coast of Central and South America. Paracaprella pusilla seems to have been introduced into European waters from multiple introduction pathways and source populations, which are likely to include populations from coastal waters of Brazil. Multiple introduction pathways may have been involved, with the most important being commercial shipping through the Strait of Gibraltar. While this tropical species appears to be expanding in the Mediterranean, populations from the westernmost limit of its geographic range in Europe showed a temporal instability. This study constitutes the first molecular approach focused on this species, but it is also the first study of temporal change in genetic diversity of any introduced marine amphipod. Additional intensive sampling of this species, including both native and non-native populations, and detailed temporal studies are still necessary to properly understand how genetic diversity influences the introduction and survival of P. pusilla in invaded areas.
Caprellid amphipod, founder effect, genetic diversity, global change, multiple introduction pathways, population genetics, temporal fluctuations.
Non-indigenous species (NIS) are a fundamental component of global change and are currently considered one of the most important drivers of biodiversity alteration in marine ecosystems worldwide (
Marine organisms have been spread by human-mediated transport long before the first comprehensive biological studies were carried out (
Europe, where approximately 1500 NIS have been introduced, is the major recipient of marine NIS worldwide (
Nonetheless, most genetic studies on NIS have focused on terrestrial and freshwater organisms (
Crustaceans are among the most introduced taxa worldwide (
Three non-indigenous species of caprellids have been recorded in temperate European seas: Caprella mutica Schurin, 1935 (
Paracaprella pusilla is a tropical caprellid species first described from Brazil (type locality: Rio de Janeiro) (
Two main pathways have been suggested for the introduction of P. pusilla to European waters. Ship fouling is the most probable vector for the introduction and dispersion of this species (
Another question that remains genetically unexplored is whether P. pusilla is indeed a cosmopolitan species or if populations across its presumed large range belong to different cryptic species. In the order Amphipoda, molecular evidence supports the existence of cryptic species among widely distributed marine NIS, such as Ampithoe valida Smith, 1873 and Jassa marmorata Holmes, 1905, two biofouling species introduced to the Northeast Pacific (
In this study, we analysed the genetic diversity, population structure, and levels of differentiation of populations of P. pusilla from its presumed native and introduced distribution ranges. We sequenced mitochondrial and nuclear genes of P. pusilla in order to (i) provide the first molecular evidence to verify the conspecificity of populations; (ii) shed light on this species’ native range, and (iii) to infer its introduction pattern in temperate European waters, particularly on the Iberian Peninsula. In addition, we analysed the temporal pattern of genetic diversity at Cadiz marina, which is the westernmost limit of the range of P. pusilla in Europe, beginning soon after its first detection and for a period of eight years. We use the Cadiz marina as a model for understanding how genetic diversity influences the introduction process of this tropical NIS into new areas where it previously could not survive. This information is crucial to better understanding the initial phases of marine introductions and identifying the factors associated with it. Additionally, this information allows for the better understanding of possible future invasions to other localities on the Atlantic coasts of Europe in the scenario of global warming, and, thus, it provides valuable information for the effective management of introduced species. As far as we know, this is the first study of temporal change in genetic diversity of an introduced marine amphipod.
Spatial sampling.
A total of 230 specimens of P. pusilla were collected from 12 localities across its presumed native and introduced geographic ranges, including from the type locality at Rio de Janeiro and the whole of its introduced range in Europe (Table
To compare the levels of intra- and interspecific genetic diversity, four individuals of the congeneric Paracaprella tenuis Mayer, 1903 from Celestún, Mexico (Table
Temporal sampling.
Paracaprella pusilla was first recorded in Europe in September 2010 on a floating pontoon at Cadiz marina, southern Spain, during a survey of peracarid crustaceans from harbours along the Strait of Gibraltar (
Paracaprella pusilla sampling information. Sampling localities, location codes, source countries, geographical coordinates, substrata, and year of collection. Data for Cadiz Marina (ESCAD) correspond to the sample used in the spatial analysis.
Locality | Location Code | Country | Coordinates | Habitat | Sampling |
Paracaprella pusilla | |||||
Cadiz Marina (Puerto América, Cádiz) | ESCAD | Spain | 36°32'29"N, 6°17'61"W | Marina – Eudendrium spp. | 2010–2017 |
Puente de Hierro Marina (San Fernando, Cádiz) | ESSFN | Spain | 36°29'02"N, 6°10'44"W | Marina – Eudendrium sp. | 2016 |
Palma Marina (Baleares) | ESBAL | Spain | 39°33'54"N, 2°37'58"E | Marina – Halocordyle sp. | 2011–2012 |
Gulf of Gabès (Kneiss Channel) | TNGGB | Tunisia | 34°20'46"N, 10°14'44"E | Fine sand | 2016 |
Zikim Beach | ILZIK | Israel | 31°36'45"N, 34°30'16"E | Drifting Bugula neritina | 2014 |
Trinity Inlet Cairns (Queensland) | AUAUS | Australia | 16°57'56"S, 145°47'34"E | Raft | 2013 |
Ilha Cotinga (Paraná) | BRILH | Brazil | 25°31'36"S, 48°28'22"W | Submerged artificial substrata | 2012 |
Paranaguá Bay (Paraná) | BRPAB | Brazil | 25°30'03"S, 48°31'47"W | Experimental plates | 2009 |
Paranaguá Marina (Paraná) | BRPAR | Brazil | 25°30'53"S, 48°29'52"W | Marina – Eudendrium sp. | 2012 |
Niteroi (Rio de Janeiro) | BRRIO | Brazil | 22°55'42"S, 43°06'36"W | Marina – Hydroids spp. | 2012 |
São Sebastião (São Paulo) | BRSAO | Brazil | 23°46'06"S, 45°24'06"W | Marina – Eudendrium sp. | 2012 |
Sisal | MXSIS | Mexico | 21°40'44"N, 90°03'26"W | Drifting seaweeds on sediment | 2010 |
Paracaprella tenuis | |||||
Celestún | MXCEL | Mexico | 20°51'32"N, 90°24'08"W | Drifting seaweeds on sediment | 2010 |
OUTGROUPS | |||||
Caprella liparotensis | |||||
Benalmádena (Málaga) | ESBENA | Spain | 36°34'51"N, 04°33'30"W | Intertidal macroalgae | 2014 |
Caprella danilevskii | |||||
Al-Hoceima | MAAHO | Morocco | 35°15'04"N, 03°55'09"E | Intertidal macroalgae | 2013 |
Genomic DNA was extracted from gnathopods, pereopods, antennae and gills along one side of the body of each specimen sampled. We used the commercial kit PureLink Genomic DNA Mini Kit (Invitrogen, UK) according to the manufacturer’s protocol. The DNA was eluted in 120 µl of elution buffer and stored at −20 °C.
Fragments of two mitochondrial (COI and 16S rRNA) and two nuclear (28SrRNA and ITS) genes were amplified by polymerase chain reaction (PCR), the latter two genes only for a subset of representative individuals of each population. PCR amplifications consisted of 25 µl reaction volumes containing 3 μl of template DNA, 10× MgCl2-free buffer (Invitrogen, UK), 3 mM (for COI gene)/2.5 mM (for 16S, 28S and ITS genes) MgCl2, 0.2 mM dNTPs, 1 μM of each primer, 0.1 μg μl-1 Bovine Serum Albumin (BSA, Promega, Madison, WI), 0.3 U Platinum Taq DNA polymerase (Invitrogen, UK), and double-distilled H2O to volume. Primers for amplification and PCR conditions are listed in Table
PCR product purification and unidirectional or bidirectional Sanger sequencing were provided by a commercial company (GENEWIZ, London, UK).
Primers used for amplification and PCR conditions used in the present study.
Primer | Sequence (5'-3') | Source | PCR conditions |
COI | |||
jgLCO1490 | TITCIACIAAYCAYAARGAYATTGG |
|
94 °C (4'); [x40] 94 °C (45''), 45 °C (50"), 72 °C (1'); 72 °C (10') |
jgHCO2198 | TAIACYTCIGGRTGICCRAARAAYCA | ||
LCO1490 | GGTCAACAAATCATAAAGATATTGG |
|
|
HCO1490 | TAAACTTCAGGGTGACCAAAAAATCA | ||
16S rRNA | |||
16STf | GGTAWHYTRACYGTGCTAAG |
|
94 °C (2.30'); [x36] 94 °C (40''), 54 °C (40''), 65 °C (1.20'); 65 °C (8') |
16Sbr | CCGGTTTGAACTCAGATCATGT |
|
|
28S rRNA | |||
28S rd1a | CCCSCGTAAYTTAGGCATAT |
|
94 °C (4'); [x40] 94 °C (20''), 58 °C (1'), 72 °C (2'); 72 °C (10') |
28Sb | TCGGAAGGAACCAGCTAC |
|
|
28SDKF | GATCGGACGAGATTACCCGCTGAA |
|
|
LSU1600R | AGCGCCATCCATTTTCAGG |
|
|
ITS | |||
ITS1F | CACACCGCCCGTCGCTACTACCGAT |
|
94 °C (1.30'); [x33] 94 °C (20''), 56.8 °C (30''), 72 °C (30''); 72 °C (5') |
ITS1R | GCGGCAATGTGCATTCGACATGTGA |
The resulting sequences were checked and edited using SEQUENCHER version 5.4.6 (Gene Codes Corporation, Ann Arbor, MI, USA). Mitochondrial COI sequences were translated into amino acids to search for stop codons that are indicative of the presence of pseudogenes. All sequences were thereafter deposited in GenBank (Suppl. material
For mitochondrial (COI and 16S) and ITS genes, all sequences were aligned using MUSCLE (
Phylogenetic reconstruction.
Phylogenetic relationships were estimated using two model-based methods of phylogenetic inference to verify whether alternative topologies were supported by different tree-building approaches: Bayesian inference (BI) in MrBayes version 3.2.6 (
Furthermore, relationships among mitochondrial haplotypes (using the concatenated dataset) were examined via a haplotype network using statistical parsimony method (
Estimates of genetic diversity and population structure.
Two measures of mtDNA diversity, haplotype (Hd,
The genetic differentiation among populations was determined by means of the statistics FST (
Finally, to test if the selection of demographic events (population expansion or contraction) affected the genetic structure of non-native and potentially native populations, neutrality tests (Tajima’s D, Fu’s FS and Ramos-Onsis and Rozas’ R2) (
In the Cadiz marina (ESCAD) population, genetic diversity over time was assessed by estimating the haplotype (Hd) and nucleotide (π) diversity (
Estimates of population differentiation over time were obtained from pairwise FST calculations for the mitochondrial dataset, and neutrality tests (Tajima’s D, Fu’s FS and Ramos-Onsis and Rozas’ R2) were also estimated. All these analyses were conducted as described for the spatial analysis. The MDS analysis based on the matrix of FST values was performed together with the data from the spatial analysis.
The mitochondrial markers COI and 16S rRNA were successfully amplified for 236 caprellid individuals: 230 Paracaprella pusilla, four P. tenuis, and the outgroups Caprella liparotensis and C. danilevskii (Suppl. material
Genetic diversity of Paracaprella pusilla for each sampling site and region. Number of individuals per location (N), number of haplotypes (H), haplotype codes (private haplotypes indicated in bold), haplotype diversity (Hd) and nucleotide diversity (π).
Region | Population | N | H | Haplotype codes | Hd | π |
Northeast Atlantic + Mediterranean | ESCAD | 75 | 9 | H1, H2, H3, H4, H5, H6, H7, H8, H9 | 0.764 | 0.00598 |
ESSFN | 25 | 8 | H1, H2, H3, H4, H7, H9, H10, H11 | 0.713 | 0.00366 | |
ESBAL | 53 | 10 | H2, H6, H12, H13, H14, H15, H16, H17, H18, H19 | 0.777 | 0.00240 | |
TNGGB | 3 | 2 | H20, H21 | 0.667 | 0.00066 | |
ILZIK | 1 | 1 | H2 | – | – | |
Total | 157 | 21 | 0.849 | 0.00460 | ||
South Pacific | AUAUS | 15 | 6 | H2, H19, H22, H23, H24, H25 | 0.790 | 0.00220 |
Total | 15 | 6 | 0.790 | 0.00220 | ||
Western Atlantic (presumed native) | BRILH | 10 | 5 | H2, H25, H26, H27, H28 | 0.756 | 0.00305 |
BRPAB | 11 | 5 | H22, H25, H29, H30, H31 | 0.782 | 0.00456 | |
BRPAR | 7 | 4 | H2, H20, H28, H32 | 0.810 | 0.00104 | |
BRRIO | 6 | 4 | H2, H27, H33, H34 | 0.800 | 0.00125 | |
BRSAO | 9 | 4 | H2, H25, H35, H36 | 0.778 | 0.00269 | |
MXSIS | 15 | 4 | H2, H37, H38, H39 | 0.600 | 0.00151 | |
Total | 58 | 18 | 0.877 | 0.00310 | ||
TOTAL | 230 | 39 | 0.879 | 0.00418 |
The nuclear marker 28S was amplified for 60 P. pusilla individuals and the two outgroups species (Suppl. material
Finally, the alignment of the nuclear ITS marker had a total of 518 bp and included 73 P. pusilla and four P. tenuis individuals, plus the two outgroup species (Suppl. material
Phylogenetic reconstruction.
Phylogenetic analyses of the mitochondrial dataset using the two different approaches (ML and BI) rendered trees with similar overall topologies, with main clades receiving high bootstrap or posterior probabilities support (Suppl. material
The haplotype network reconstruction for all sequenced mtDNA data retrieved two separate networks that could not be connected using the 95% parsimony connection limit (Fig.
Mitochondrial (COI+16S) haplotype network of Paracaprella pusilla from its presumed native and non-native range. Haplotypes 6 and 7, corresponding with 10 individuals of Cadiz (ESCAD and ESSFN) and Baleares (ESBAL) populations, were grouped in an independent network. This network could not be connected using the 95% parsimony connection limit to the main haplotype network which includes most of the haplotypes found in P. pusilla. Haplotype circles are proportional to haplotype frequency and numbers represent haplotype identities (Table
Genetic diversity and population structure.
The spatial distribution of the 39 mitochondrial haplotypes of P. pusilla did not show any clear pattern (Table
Geographical distribution of the 39 mtDNA haplotypes (Hp) of Paracaprella pusilla in the populations sampled. Each site is represented by a pie chart showing population composition and relative haplotype frequency. Number of analysed individuals per population appears in brackets. White-shaded areas are the cumulative proportion of private haplotypes per location. Sites are coded as in Tables
Overall, haplotype (Hd = 0.879) and nucleotide (π = 0.00418) diversities were high (Table
The estimates of pairwise FST values showed mostly low and intermediate levels of divergence between populations, with significant values ranging from 0.067 (ESCAD-AUAUS) to 0.538 (TNGGB-MXSIS) (Table
Multidimensional scaling plot (MDS) based on FST values for Paracaprella pusilla. For Cadiz marina (ESCAD) population, four points are represented, each one corresponding to one of the four years when the species was recorded. Populations are coloured according to the region they belong: Northeast Atlantic + Mediterranean (red); South Pacific (green); and presumed native region (blue).
Pairwise FST values between populations of Paracaprella pusilla, based on mtDNA COI+16S sequences. Significant values (p < 0.05) are indicated with an asterisk.
ESCAD | ESSFN | ESBAL | TNGGB | AUAUS | BRILH | BRPAB | BRPAR | BRRIO | BRSAO | |
ESCAD | ||||||||||
ESSFN | 0.019 | |||||||||
ESBAL | 0.125* | 0.072* | ||||||||
TNGGB | 0.105 | 0.142 | 0.275 | |||||||
AUAUS | 0.067* | 0.021 | 0.088* | 0.282* | ||||||
BRILH | 0.078 | 0.044 | 0.122* | 0.219* | 0.006 | |||||
BRPAB | 0.192* | 0.228* | 0.335* | 0.286* | 0.122 | 0.088 | ||||
BRPAR | 0.049 | −0.009 | 0.058 | 0.431* | 0.394 | 0.044 | 0.255* | |||
BRRIO | 0.058 | 0.026 | 0.095 | 0.511* | 0.099 | 0.070 | 0.260* | 0.179* | ||
BRSAO | 0.059 | 0.012 | 0.089* | 0.244* | 0.013 | −0.046 | 0.156 | 0.044 | 0.005 | |
MXSIS | 0.187* | 0.195* | 0.293* | 0.538* | 0.297* | 0.290* | 0.401* | 0.367* | 0.397* | 0.296* |
AMOVA tests. Results of the AMOVA tests comparing variation in mitochondrial sequences of Paracaprella pusilla grouped at two geographical levels: (A) presumed native vs non-native, and (B) regions. Significance at p < 0.05 (*) and at p < 0.0001 (**). Statistical probabilities derived from 16000 permutations.
Group | Source of variation | d.f. | Sum of squares | Variance components | Percentage of variation |
A Presumed native vs non-native | Between groups | 1 | 13.062 | 0.067 | 3.02 (FCT = 0.030) |
Among populations w/in groups | 9 | 57.520 | 0.245 | 11.01 (FSC = 0.114*) | |
Within populations | 218 | 417.707 | 1.916 | 85.97 (FST = 0.140**) | |
Total | 228 | 488.288 | 2.229 | ||
B Regions | Among groups | 2 | 17.036 | 0.024 | −5.30 (FCT = 0.011) |
Among populations w/in groups | 8 | 53.546 | 0.263 | 23.84 (FSC = 0.121*) | |
Within populations | 218 | 417.707 | 1.916 | 81.46 (FST = 0.130**) | |
Total | 228 | 488.288 | 2.203 |
Neutrality tests, Tajima’s D, Fu’s FS and Ramos-Onsis and Rozas’ R2, were negative for all regions but not statistically significant (Table
Mismatch distribution of Paracaprella pusilla for each region. a) Europe (Northeast Atlantic + Mediterranean), b) Australia (South Pacific), and c) presumed native region. Blue bars show the observed frequency distributions and the orange lines represent the expected ones under the sudden expansion model.
Neutrality tests and mismatch distribution analysis for mitochondrial sequences of Paracaprella pusilla for each region. Negative and significant values for Tajima’s D, Fu’s FS and Ramos-Onsis and Rozas’ R2 tests indicate population expansion; SSD = sum of squared deviations between observed and expected distributions; Rg = Harpending’s raggedness index; *p < 0.05, **p < 0.02.
Northeast Atlantic + Mediterranean | South Pacific | Western Atlantic (presumed native) | |
Tajima’s D | −1.414 | −1.543 | −1.166 |
Fu’s FS | −1.704 | −0.379 | −5.661* |
R2 | 0.047 | 0.127 | 0.064 |
SSD | 0.014 | 0.111* | 0.107** |
Rg | 0.040 | 0.074 | 0.034 |
Paracaprella pusilla was monitored in Cadiz marina (ESCAD) soon after its first detection and for a period of eight years (2010–2017). However, the species was not found during the surveys carried out from 2012 to 2015. Therefore, we considered only four years (2010, 2011, 2016 and 2017) in our study.
Nine haplotypes (same as in the spatial study; Table
The FST statistics showed intermediate levels of divergence between years, with significant values ranging from 0.131 (2010–2011) to 0.261 (2010–2017). Significant differentiation was found between years 2010, 2011 and 2017. Only the year 2016 did not show genetic differences from the other years during the monitoring period, but this could be an artefact due to the low sample size (N = 3). In the MDS plot, the year 2017 appeared more separated from the remaining monitoring years carried out in the Cadiz marina population (Fig.
Finally, Tajima’s D, Fu’s FS and Ramos-Onsis and Rozas’ R2 were negative and not significant for all years (Table
Neutrality tests for mitochondrial sequences of Cadiz marina (ESCAD) population over time. Negative and significant values for Tajima’s D, Fu’s FS and Ramos-Onsis and Rozas’ R2 tests indicate population expansion; *p < 0.05; **p < 0.02.
2010 | 2011 | 2016 | 2017 | |
Tajima’s D | 0.907 | −1.020 | 0 | 0.387 |
Fu’s FS | 4.096 | 4.970 | 4.946 | 4.221 |
R2 | 0.190 | 0.079 | 0.472 | 0.171 |
Unlike other caprellid taxa with a wide distribution, such as Caprella penantis (
The Atlantic coast of Central and South America has been postulated as the most likely native range for P. pusilla (
There are, however, several aspects that point to the Atlantic coast of Central and South America as the most likely native area for P. pusilla. First, most records of P. pusilla, both recent and old, come from this area (
Global distribution of Paracaprella pusilla and the genus Paracaprella a Current worldwide distribution of P. pusilla including its introduced range and the proposed native range. Information based on
Genetic studies have shown that introduced populations are generally much less diverse than the native ones because of the founder effects and post-introduction demographic bottlenecks (
Our results support the existence of one of the two main introduction pathways previously suggested by
On the other hand, although P. pusilla has not been reported in the Suez Canal since
Paracaprella pusilla was reported for the first time in European waters in the fouling community of a marina on the Atlantic coast of southwest Spain (
Interestingly, the presence in Palma marina (ESBAL) population of one haplotype (H19) also found in Australia (AUAUS) (Table
Our monitoring of the Cadiz marina (ESCAD) population showed a progressive loss of genetic diversity over time (Suppl. material
Together with the increase in maritime traffic, climate change directly or indirectly increases the spread of NIS into new areas (
Our study constitutes the first molecular approach to verify P. pusilla as a neocosmopolitan species, which has been introduced in European waters from multiple introduction pathways likely including at least populations from Brazil. Molecular, ecological and biogeographic evidences point to the Atlantic coast of Central and South America as the likely native range of P. pusilla. While the species appears to be expanding in the Mediterranean, populations from the westernmost distribution limit in Europe (the Atlantic coast of southern Spain) showed a temporal instability. This may indicate that P. pusilla is not fully adapted to the environmental conditions in this area, with a water temperature cooler than in the Mediterranean. Further intensive sampling including both native (especially Caribbean populations) and non-native populations of this species, as well as temporal genetic studies, are still necessary to improve knowledge on the diversity of this species in its native and introduced range, confirm the introduction pattern suggested here, and understand the ecological and evolutionary process involved in the introduction success or failure of this species in European waters.
We especially thank Elena Baeza-Rojano and Mariana Lacerda who kindly provided samples from Mexico (Sisal and Celestún) and Brazil (Paranaguá Bay), respectively. Financial support for this study was provided by the Consejería de Economía, Innovación, Ciencia y Empleo, Junta de Andalucía (Project P11-RNM-7041), by Ministerio De Ciencia, Innovación y Universidades (Project CGL2017-82739-P co-financed by the Agencia Estatal de Investigación and Fondo Europeo de Desarrollo Regional [FEDER]), by FEDER funds through the Programa Operacional Factores de Competitividade and national funds through Fundação para a Ciência e a Tecnologia – within the scope of the project FCOMP-01-0124-FEDER-PTDC/MAR/118205/2010, and by Norte Portugal Regional Operational Programme (NORTE2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF) under the project MarInfo (NORTE-01-0145-FEDER-000031). Abir Fersi is a PhD student at Sfax University (Tunisia) and Caen Normandy University (France); she received financial support from Sfax University and UMR M2C Caen for a four-month stay in Caen from September to December 2017. We thank the subject editor Adam Petrusek and the two reviewers whose helpful comments improved the manuscript.
Table S1. Individual code, specimen voucher, and GenBank accession numbers of COI, 16S, 28S and ITS sequences amplified
Data type: molecular data
Figure S1. Bayesian tree of mitochondrial DNA (COI+16S) haplotypes
Data type: phylogenetic tree
Explanation note: The tree was rooted with Caprella danilevskii and Caprella liparotensis. Values at the nodes correspond to ML bootstrap support and Bayesian posterior probabilities, respectively. Numbers inside brackets indicate the corresponding haplotypes.
Table S2. Uncorrected pairwise distances between mtDNA haplotypes
Data type: molecular data
Explanation note: Percentage of average sequence divergence values (based on uncorrected p distances) between Paracaprella pusilla, Paracaprella tenuis, and the outgroups Caprella liparotensis and Caprella danilevskii. Distances equal or above 1% are depicted in bold.
Table S3. Changes in genetic variation in Cadiz marina (ESCAD) population over time
Data type: molecular data
Explanation note: Year of collection, total number of individuals (N), individuals belonging to each haplotype (H1–H9), haplotype diversity (Hd) and nucleotide diversity (π) per year are shown.
Data type: phylogenetic tree
Explanation note: A Phylogenetic tree of nuclear 28S rRNA. Unfortunately, this gene could not be amplified in P. tenuis species. In P. pusilla, only two haplotypes were detected, differing only by the presence of an indel. B Phylogenetic tree of nuclear ribosomal internal transcribed spacer (ITS). No variation was observed among P. pusilla sequences. Trees were rooted with Caprella danilevskii and Caprella liparotensis. Values at the nodes correspond to ML bootstrap support and Bayesian posterior probabilities, respectively.