Research Article |
Corresponding author: Ramiro O. Bustamante ( rbustama@uchile.cl ) Academic editor: Curtis Daehler
© 2020 Ramiro O. Bustamante, Lúa Alves, Estefany Goncalves, Milen Duarte, Ileana Herrera.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Bustamante RO, Alves L, Goncalves E, Duarte M, Herrera I (2020) A classification system for predicting invasiveness using climatic niche traits and global distribution models: application to alien plant species in Chile. NeoBiota 63: 127-146. https://doi.org/10.3897/neobiota.63.50049
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Functional traits that predict plant invasiveness are a central issue in invasion ecology. However, in many cases they are difficult to determine, especially for a large set of species. Climatic niche traits can overcome this problem due to the ease of acquiring them for a large number of species. This effort is critical given that knowledge of species invasiveness is necessary (although not sufficient) to anticipate/manage invasive species.
In this study, we examined thermal and hydric niche traits to predict plant invasiveness. We used a set of 49 alien plant species, representative of the alien flora of Chile. Niche traits were obtained using environmental information (WorldClim) and global occurrences. Invasiveness was estimated using global niche models and projection of the potential distribution in Chile. As a final step, we reviewed the literature for a subset of species, documenting their impacts on a) biodiversity, b) crop agriculture and c) livestock.
Thermal niche breadth and thermal niche position were the most important niche traits to predict potential distribution (a proxy of invasiveness). Using thermal niche breadth and niche position traits, we constructed a graphical model that classifies alien species as highly invasive (wide thermal niche breadth and low niche position) or low potential to be invasive (narrow niche breadth and high niche position). We also found no association between our invasiveness classification and the documented impact of alien species.
Chile, climatic niche, alien plants, functional traits, hydric niche, invasiveness, potential distribution, thermal niche, invasion ecology
Which traits make alien species invasive? This question has been central in invasion ecology (
An alternative approach has been the use of climatic niches of alien species to predict invasiveness (
According to niche-biotope duality (
As alien species certainly colonise non-analogue climate regions due to niche shift (
At a biogeographical level, two climatic niche traits can be used: (i) climatic niche breadth (i.e. the range of climate variation where a species occurs) (
Chile is currently home to a large and rapidly increasing number of alien plants; more than 700 alien vascular plants have been recorded (
The term invasiveness is often correlated positively with harmful impacts on biodiversity, economy or health. This may be because, as a species spreads across a larger area, it has a greater probability of producing detrimental effects on the environment (
Making a distinction between invasiveness and impact is critical for management. The Chilean government has identified various different actions needed for the management of invasive species in Chile. One of them is to conduct basic and applied research to develop validated procedures to study invasiveness and risk analysis for hundreds of alien species living in aquatic and terrestrial ecosystems (“
In this study, we have examined climatic niche traits to predict invasiveness for a set of alien plants in Chile. In order to do so, we used global climate information to obtain the thermal and hydric niche breadth and position of 49 species and GSDMs to predict the sizes of their distribution areas in Chile. We summarise this information in a predictive framework that enables us to classify species as having either high or low predicted invasiveness. In addition, we have explored the association between invasiveness and impact using our results and impact information obtained from literature.
The stages followed to collect and analyse data are summarised in Fig.
The number of alien species selected for this study was 49; two shrubs and 47 herbs (see Suppl. material
The 49 alien species were obtained from published information (
The climate information required for the GSDMs was obtained from WorldClim (
From the GSDMs, we estimated alien plant invasiveness using the size of the potential distribution area as a proxy. We used MaxEnt software, which implements a machine-learning method that enables potential distribution to be predicted using only presences, under the principle of maximal entropy (
The climate envelope of the GSDMs included the climates of the five continents (excluding Antarctica), so for each model, we increased the number of pseudo-absences to 10,000, following
Binary projections to discern suitable/unsuitable habitats that are generated by different thresholds in SDMs may differ drastically; therefore, choosing the correct threshold is not arbitrary (
From climate information obtained from WorldClim (
(1)
Hydric niche breadth (Hnb) was estimated by subtracting the maximum precipitation in the wettest month (BIO13) from the minimum precipitation in the driest month (BIO14)
(2)
We defined the thermal niche position of species i (TNPi) as the difference (or distance) between the mean thermal niche and the mean annual temperatures in Chile (Eq. 3). Similarly, the hydric niche position (HNPi) is the difference (or distance) between the mean hydric niche and the mean annual precipitation in Chile (Eq. 4). (Phase 4, Fig.
(3)
(4)
We related potential distribution size to thermal and hydric niche traits. The distribution size data followed a Weibull distribution (see Suppl. material
We summarised our results in a bi-dimensional plane including species position in relation to the two most important climatic niche traits. Our aim was to provide a predictive tool to classify species invasiveness using only climatic niche traits. We are aware that there are factors other than climate that may determine invasion success; however, climate is the first barrier for colonisation. Following validation, this approach could provide a rapid screen to measure invasiveness for a large number of alien species (animals and plants) in a short time. We standardised the niche traits for species using the algorithm:
,
where NTi represents niche traits of species i (thermal or hydric niche amplitude or position); aNT is the average niche trait estimated for the 49 species and σNT is the standard error of NT. In this way, the plane is divided into four regions. In Quadrant I, TNB values are negative and TNP values are positive; species that fall into this zone have low invasive potential. In Quadrant IV, TNB values are positive and TNP values are negative; species that fall into this zone have high invasive potential. Quadrant II and Quadrant III contain the species with intermediate invasive potentiality (for more details see the text in Fig.
To determine whether there is an association between predicted invasiveness, based on climatic niche and impacts of alien species, we conducted literature reviews to assess evidence of impact during the last 30 years. The impact was measured qualitatively; that is, whether there was any documentation of impacts or not. We classified impact into three general categories: (i) on biodiversity, (ii) on crop agriculture and (iii) on livestock.
We searched for evidence of impact of alien species that fall within Quadrant I (low invasiveness) and Quadrant IV (high invasiveness) (Fig.
The performance of the GSDMs was quite good as measured by the AUC values (average = 0.977; SD = 0.014) and the Boyce Index (average = 0.970; SD = 0.06) (for detailed data, see Suppl. material
Global Species Distribution Models (GSDMs) projected in Chile for a sub-set of species A Spergula arvensis (the highest distribution size) B Atriplex numularia (the lowest distribution size) C Agrostis capillaris (representative of Poaceae) D Cirsium vulgaris (representative of Asteraceae) D Medicago sativa (representative of Fabaceae). For the rest of exotic species, see Suppl. material
We detected significant positive effects of TNB on potential distribution size (Table
GAMLSS for testing the effect of thermal and hydric niche traits on potential distribution predicted from global niche models on 49 alien plant species in Chile. The pseudo-R2 of the model was 0.45.
Factors | Estimate | Standard error | t – value | p – value |
---|---|---|---|---|
Intercept | 12.659 | 0.640 | 19.786 | << 0.001 |
Thermal niche breadth (TNB) | 0.022 | 0.009 | 2.526 | 0.016 |
Thermal niche position (TNP) | −0.043 | 0.024 | −1.798 | 0.082 |
Hydric niche breadth (Hnb) | −0.0006 | 0.0008 | −0.798 | 0.429 |
Hydric niche position (HNP) | −0.001 | 0.002 | −0.470 | 0.641 |
Relation of niche traits and Potential distribution size (×10000) in km2, for a set of 49 exotic plants occurring in Chile A Thermal niche breadth B Thermal niche position C Hydric niche breadth D Hydric niche position. We detected significant effects for Thermal niche breadth and position. The p-values were obtained from GAMLSS. Confident intervals were constructed with LOESS regression analysis.
Standardised TNP and standardised TNB were negatively correlated (Pearson; r = −0.69, p < 0.001; Fig.
Summary of species position in a bidimensional-plane whose axes are standardized thermal niche breadth and thermal niche position from a sample of 49 exotic plants in Chile. Niche values were standardized using the expression ((NT)_i-aNT))/σNT. The point (0, 0) represents the average values of both niche traits. Quadrant I represent the area of low invasiveness; Quadrant IV represents the area of high invasiveness. Dots represent the position of species within the two-phase plane. Dots size represents species distribution size. Gray dots: species with distribution size lower than average: black dots: species with distribution size higher than average.
List of alien plant species which fall into Quadrant I (low invasiveness) and Quadrant IV (highly invasiveness), according to the classification obtained from Figure
Species with low invasiveness (Quadrant I) | Species with high invasiveness (Quadrant IV) |
---|---|
Ammi visnaga | Aira caryophyllea |
Atriplex nummularia | Bromus catharticus |
Atriplex suberecta | Bromus sterilis |
Carthamus lanatus | Cardamine hirsuta |
Conyza bonariensis | Cirsium vulgare |
Cynosurus echinatus | Convolvulus arvensis |
Datura ferox | Daucus carota |
Dolichos lignosus | Erodium cicutarium |
Fumaria agraria | Galium aparine |
Lupinus arboreus | Hordeum jubatum |
Mesembryanthemum crystallinum | Matricaria discoidea |
Pennisetum clandestinum | Medicago sativa |
Ruta chalepensis | Polypogon monspeliensis |
Sanguisorba minor | Rumex longifolius |
Scirpus mucronatus | Sonchus asper |
Sonchus tenerrimus | Spergula arvensis |
Spergularia media | Stellaria media |
Stellaria pallida | Veronica scutellata |
Vulpia muralis | Vicia sativa |
Vicia villosa |
We detected no association between predicted Invasiveness (based on quadrant position, Figure
Contingency table showing the number of alien species cross-classified by invasiveness and impact: a) low invasiveness and high invasiveness: the counts were obtained from Quadrant 1 and Quadrant 4; Figure
Impact | No impact | Total | |
---|---|---|---|
Low invasiveness | 11 | 8 | 19 |
High invasiveness | 12 | 8 | 20 |
Total | 23 | 16 | 39 |
In our study, we examined the importance of thermal and hydric niche traits to predict alien plant invasiveness. We have also provided a simple protocol for a rapid assessment of invasiveness. We will discuss our results in light of plant physiology, the use of SDMs in terms of advantages and limitations of our study to support the control and management of alien species.
One surprising result was that hydric niche traits were not important for explaining predicted plant distribution area (
Climatic niche breadth has frequently been used to predict invasiveness (“niche breadth-invasion success hypothesis”) (
Determining which traits promote plant invasiveness is a central issue in biological invasion research (
Incorporating global climate data into GSDMs is essential for a reasonable approximation of a species’ potential to invade across different regions beyond its native ranges (
Invasiveness assessment is an important input for alien species management; however, for a more comprehensive approach, we need to know impacts. For most people (i.e. stakeholders and policy-makers), invasiveness and impact are synonymous (
We propose to focus primarily on the 12 species that were predicted to be highly invasive and, at the same time, were documented to have impacts (see Table
The issue of the impact of invasive plant species is the subject of an ongoing interdisciplinary research programme (
In our study, we have demonstrated the importance of thermal niche traits for predicting alien plant invasiveness. Based on these results, we have proposed a conceptual framework that classifies species according to their anticipated level of invasiveness. For management purposes and to assess comprehensive risk, it is mandatory to also implement impact assessment because higher invasiveness does not necessarily imply higher impact.
We acknowledge the support of grants ICM P02-005 and PBF-23, for the development of this study. We also acknowledge partial support of FONDECYT 1180193 to R. O. Bustamante.
Table S1. Exotic species located in Quadrant 1 (see Figure
Data type: occurrence
Table S2. Basic information obtained for 49 exotic plants in Chile
Data type: species data
Map of the species
Data type: occurrence