Corresponding author: Trudy Paap ( trudy.paap@fabi.up.ac.za ) Academic editor: David Richardson
© 2020 Trudy Paap, Michael J. Wingfield, Treena I. Burgess, Joseph M. Hulbert, Alberto Santini.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Paap T, Wingfield MJ, Burgess TI, Hulbert JM, Santini A (2020) Harmonising the fields of invasion science and forest pathology. In: Wilson JR, Bacher S, Daehler CC, Groom QJ, Kumschick S, Lockwood JL, Robinson TB, Zengeya TA, Richardson DM. NeoBiota 62: 301-332. https://doi.org/10.3897/neobiota.62.52991
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Invasive alien species are widely recognised as significant drivers of global environmental change, with far reaching ecological and socio-economic impacts. The trend of continuous increases in first records, with no apparent sign of saturation, is consistent across all taxonomic groups. However, taxonomic biases exist in the extent to which invasion processes have been studied. Invasive forest pathogens have caused, and they continue to result in dramatic damage to natural forests and woody ecosystems, yet their impacts are substantially underrepresented in the invasion science literature. Conversely, most studies of forest pathogens have been undertaken in the absence of a connection to the frameworks developed and used to study biological invasions. We believe this is, in part, a consequence of the mechanistic approach of the discipline of forest pathology; one that has been inherited from the broader discipline of plant pathology. Rather than investigating the origins of, and the processes driving the arrival of invasive microorganisms, the focus of pathologists is generally to investigate specific interactions between hosts and pathogens, with an emphasis on controlling the resulting disease problems. In contrast, central to the field of invasion science, which finds its roots in ecology, is the development and testing of general concepts and frameworks. The lack of knowledge of microbial biodiversity and ecology, speciation and geographic origin present challenges in understanding invasive forest pathogens under existing frameworks, and there is a need to address this shortfall. Advances in molecular technologies such as gene and genome sequencing and metagenomics studies have increased the “visibility” of microorganisms. We consider whether these technologies are being adequately applied to address the gaps between forest pathology and invasion science. We also interrogate the extent to which the two fields stand to gain by becoming more closely linked.
coevolution, emerging, forest pathogens, invasion framework, invasive forest pathogens, microbial invasions, tree disease
Invasive alien species (IAS) present a major threat to global biodiversity, ecosystem services, economies and human health. In the present era of globalisation, and with no end in sight to the accumulation of alien species worldwide (
The low level of recognition regarding the importance of forest pathogens in invasion science is concerning, when considering the substantial effects of IFPs and their ability to completely alter landscapes. IFPs have been responsible for many disastrous outbreaks of diseases in commercial, natural and urban forests. Well known historical examples include chestnut blight (caused by Cryphonectria parasitica), Dutch elm disease (Ophiostoma ulmi sensu lato), Phytophthora cinnamomi in southwest Australia, and in more recent history, sudden oak death (Phytophthora ramorum) and ash dieback (Hymenoschyphus fraxineus) (e.g.
Coevolution between forest pathogens and their hosts, together with pressures from competition, predation and parasitism, has contributed to the complexity and stability of natural ecosystems. Severe disease outbreaks by native pathogens under natural environmental conditions, are therefore rare (
The term emerging infectious disease (EID) has its history in the medical and veterinary fields, but has also been applied to diseases of plants (
The clearest evidence for this underrepresentation is that among the IUCN list of 100 of the World’s Worst Invasive Alien Species (
There have been previous calls for increased cooperation between microbiologists and invasion scientists. For example,
This review interrogates the history of the disciplines of forest pathology and invasion science, seeking insights as to why the two fields have remained relatively unconnected. We consider several explanations for this disconnect and highlight the need to resolve these issues. By adopting the frameworks of invasion science, forest pathologists may be able to better understand how and why invasions occur. Importantly, also where, when and how invasions can be stopped or mitigated. The issue of microbial invasions has been described as one of the most pressing topics facing invasion science (
The Greek philosopher Theophrastus (c. 371 – c. 287 BC) was the first to study and write about disease of trees, cereals and legumes. However, it was not until the mid-1800s that the role of pathogenic microorganisms in causing plant disease was understood. Anton de Barry, a German surgeon, botanist and microbiologist, is recognised as the founding father of modern plant pathology and modern mycology. In 1861, de Barry documented in detail the life cycle of Phytophthora infestans and provided experimental evidence to demonstrate its role of as the causal agent of potato late blight. In doing so, he refuted the long-standing doctrine of “spontaneous generation”, and the discipline of physiological plant pathology was born (
Forest pathology emerged soon afterwards, as a branch of plant pathology dealing with diseases of woody plants growing in natural ecosystems, plantations and urban environments. The German forester Robert Hartig is widely regarded as the “father” of forest pathology. His work characterised and linked Heterobasidion annosum to conifer root and butt rot (published in 1874), refuting the notion of decay being responsible for the spontaneous generation of fungi by showing that fungi were the cause of decay (
The first half of the 1900s saw only a small number of forest pathologists working worldwide. Interestingly much of today’s understanding of forest pathology is still underpinned by the work of these few early pioneers (
Forest pathology has been strongly shaped by the influences of microbiology and health sciences, quintessential to its plant pathology roots. However, forest pathology is also a sub-field of forestry and as such, has dealt with long time scales and diverse environments, much more so than classic agronomic crop-based plant pathology (
Within the context of forest pathology, two diverging branches of the discipline have arisen. This has come about as a result of two broad settings in which forestry is undertaken; plantation forestry versus natural and semi-natural forests. Planted forests are generally very simplified ecosystems, more similar to a crop than to a natural forest. This type of silviculture, combined with a wide use of non-native tree species is the dominant, if not exclusive, form of forestry in the Southern Hemisphere (South America, South Africa, New Zealand and to an extent, Australia), and also East and South East Asia. They are typically monospecific, and characterised by both native and non-native trees mostly of the genera Pinus, Eucalyptus and Acacia (
The discipline of invasion science is a relatively young field. In 1958, the British biologist Charles
A meeting of the Scientific Committee on Problems of the Environment (SCOPE) held in 1982, identified that the invasive spread of organisms introduced by humans outside of their native ranges was a problem of global concern (
An important issue encountered in the field of invasion science is that researchers concerned with different taxa and different environments developed their science and the associated terminology, along parallel but independent lines. This has led to the use of synonymous terms for the same processes, and multiple definitions for the same term. There are also differences in how the process of invasion is described with regard to the taxon being studied. Consequently, different frameworks have been adopted across the different taxa and environments (
The lack of agreement on usage of terminology has been acknowledged as bringing an added complication to an already challenging field (
Alien/non-native/non-indigenous/exotic/foreign – An organism (species, subspecies or lower taxon) transported outside of its native range, either intentionally or unintentionally by human agency. Native/indigenous – An organism that has evolved in a given area or that arrived there by natural means, without human intervention. Endemic – An organism occurring naturally only in a particular geographic region. In a pathology context, endemic may also refer to a pathogen (or resulting disease) that is characteristic of a particular population, environment or region (i.e. it is permanently established). Cryptogenic – Taxa deemed to be alien, but without definitive supporting evidence. Invasibility – The properties of a community, habitat or ecosystem determining its inherent vulnerability to invasion by alien organisms. Invasiveness – The traits of an organism e.g. life-history traits and modes of reproduction, that determine its ability to invade, i.e. to overcome the barriers to invasion. Invasion process – A series of stages (transport, introduction, establishment, and spread) through which an organism must pass before it is considered invasive. Invasive alien species (IAS) – A self-sustaining (naturalised/established) population of a species accidentally or intentionally introduced by human actions, to an area outside of their native geographic range, into an area where they are not naturally present. While not all definitions include impact, others specify IAS cause, or are likely to cause, socio-cultural, economic, or environmental harm or harm to human health. Emerging alien species – An organism whose incidence or geographical distribution is increasing notably, or a newly introduced or newly described species. The causes of emergence may be multiple and complex, but it is generally accepted that human activities (e.g. accidental introduction, modifications of land use) play an important role ( Emerging Infectious Disease – An infectious disease appearing in a population for the first time, or that may have existed previously but is rapidly increasing in incidence or geographic range (WHO: https://apps.who.int/iris/handle/10665/204722; Invasive forest pathogen (IFP) – A pathogenic microorganism (a species, subspecies, race, or forma specialis) introduced by human actions to an area outside its natural distribution, where it behaves as an agent of disease on native or alien trees or shrubs. Epidemiology – The study of the spatial and temporal changes occurring during epidemics caused by populations of pathogens in populations of hosts, under influences of the environment – in short, how disease develops in populations. Naturalised – A self-sustaining population of an intentionally or unintentionally introduced alien species that has adapted to, and reproduces successfully, in its new environment. The term established has been used synonymously. Spill-over – A concept first proposed for animal pathogens, to describe the process of pathogen transmission from a reservoir population with a high pathogen prevalence, to a novel host population with which it has come into contact ( Spill-back – If an alien species is a competent host for a native pathogen/parasite, the population of the pathogen/parasite builds up on this host and “spills-back” onto native hosts ( Host-jump – From an evolutionary perspective, it is defined as “a colonisation of a new host species that leads to increasing genetic separation from the parent population until speciation is complete” (Thines 2019). In an ecological sense, refers to a pathogen moving from its coevolved host to a novel host, a situation facilitated by contact between previously geographically separated host species (e.g. host-jump from introduced host to native host in novel environment, or native microorganism jumping to introduced host). Also referred to as “host-shift”. Hitchhikers – Within a forest pathology context, the term refers to microorganisms transported with asymptomatic plants, including pathogens. While “hitchhiker” has not been formally defined in the invasion literature, it has been used to describe species that are carried by chance or unknowingly, in relation to the “stowaway” pathway ( |
The term “invasion” was first linked with a forest pathogen by
A rising interest and acknowledgment of the importance of invasion science as a concept relevant to forest pathology is reflected in the uptake of the use of the term “invasive”, or variations thereof, in contemporary publications by forest pathologists. To provide a view of how this has changed in recent years, we conducted a search using the Web of Science BIOSIS Citation IndexSM record data, for articles published between 1965 and 2019 that included the terms “forest”, “pathogen” and “invas*”. For comparison, we conducted searches for the same period using the terms “emerg*”, “alien”, “exotic” and “non-native”, together with “forest” and “pathogen”. The results are shown in Figure
Although pathologists have only recently adopted the invasion vocabulary, regulations regarding introduced plant pests and pathogens predate those on invasive species, with the first international convention to inhibit the spread of plant pests signed in 1878 (
Phytosanitary regulations in most countries are based on the International Plant Protection Convention (IPPC; https://www.ippc.int/about/convention-text) and the World Trade Organisation (WTO) Agreement of the Application of Sanitary and Phytosanitary Measures (SPS, http://www.wto.org/english/res_e/booksp_e/agrmntseries4_sps_e.pdf) (
The Convention on Biological Diversity (CBD) was established with the objectives of safeguarding biodiversity, ensuring its sustainable use, and equitable sharing of benefits from genetic resources. IAS are specifically addressed in the CBD Aichi Biodiversity Target 9: “By 2020, invasive alien species and pathways are identified and prioritised, priority species are controlled or eradicated, and measures are in place to manage pathways to prevent their introduction and establishment” (http://www.cbd.int/sp/targets/). While the IPPC and the CBD share some common ground and seek to find ways to cooperate (
There is a perception amongst some invasion scientists that forest pathology does not fit in studies of invasion biology because it is not related to the ecology of natural ecosystems. While this view may be somewhat appropriate for pathology conducted in agriculture or commercial forestry, not all forest pathology is conducted in this setting. There are also many situations where plantations are established adjacent to native forests accommodating related hosts, as is commonly found for Eucalyptus plantation forestry (
Many forest pathologists, even contemporary ones, have come from a classical plant pathology background, as opposed to one focussed on forestry or ecology. Consequently, their studies have had a stronger focus on local and micro-processes, on individual organisms and their interactions, and on finding immediate solutions to the problem, rather than embracing a more ecological approach (
As previously noted, when investigating a new forest disease, it is not always immediately obvious whether the outbreak results from the arrival of an alien pathogen, or is driven by environmental change. The term “emerging” does not require knowledge of the alien status of the causal agent, and encompasses the range of scenarios under which diseases of trees can develop. This includes damaging host-jumps that may occur following the establishment of an alien host. A notable example is that of Austropuccinia psidii. This rust fungus jumped from native Myrtaceae in its natural range in South America to introduced Eucalyptus (
Where disease establishes as a result of the introduction of an alien pathogen, this may be on either a native or alien host, or both. In some instances, this constitutes “pathogen reunion”, i.e. an alien pathogen arrives and establishes on a coevolved alien host, e.g. Teratosphaeria nubilosa, translocated with Eucalyptus trees, causing leaf blotch in plantation forests of South Africa (
Thousands of years of movement of plants, and with them the movement of microorganisms, has led to a situation where many pathogens are viewed as having cosmopolitan distributions i.e. naturalised (
The problem of assigning alien status is exacerbated by the vast diversity of microbial taxa, their cryptic and inconspicuous nature, and our resultant poor knowledge of microbial communities. For example, the number of fungal species on earth is unknown, but estimates range from 1.5 to several million, the majority of which have not yet been described (
Microorganisms, including IFPs, have in part been overlooked in invasion science because of the vast diversity of taxa and problems relating to naming of organisms (e.g.
A further confounding factor faced by forest pathologists is the challenge of accurate identification of microorganisms. Only in the last 30 years has there been a shift from the use of morphology-based to evolutionary biology-based species concepts (
Name-based biosecurity will remain challenging for microorganisms. Disagreements regarding definitions of species present a confounding factor, and genetic diversity in microbe populations (with various genetic strains or mating types showing variation in virulence or host range) cannot be accounted for under a name-based approach (
While there is an obvious lack of knowledge regarding the biodiversity, ecology, speciation and geographic origin of many IFPs, of all the categories of microorganisms, pathogens (including IFPs) are amongst those most widely studied. Information concerning the status (native or alien) is even less known for many other groups of microbes. The impacts of non-pathogenic microorganisms, including endophytes, saprophytes and mycorrhizal fungi, are less apparent than those of pathogens. Despite this, these microorganisms may still affect important ecosystems functions, and likely play an important role in facilitating invasions by other taxa. There has been a growing acknowledgement of the importance of studying and understanding these invasions (see
Within the discipline of invasion science, researchers studying different taxonomic groups and different environments have developed separate ways of investigating IASs. There have been efforts to reconcile these differences (see
Where microorganisms have been considered by invasion scientists, e.g.
Within the field of infectious diseases, the process by which a coevolved organism infects a novel host may be viewed as a type of “spill-over”. The concept was developed within the context of animal and human pathology (Daszek et al. 2000), however, has subsequently also been applied to plant pathogens (
The introduction of microorganisms (including IFPs) to novel regions generally occurs via the two categories of unintentional transport: “contaminant” and “stowaway”, as classified in the Convention on Biological Diversity categorisation of pathways of introduction (
Studies of impacts of IFPs have often focussed on effects on other trophic levels (e.g. the impacts of Phytophthora cinnamomi on vegetation structure), as this is where negative impacts are most readily observed (
Examining the long-term impacts of invasions e.g. level of impact, extent and rate of spread, may provide insights into pathogen or environment traits linked to the outcome of the invasion. A well-documented example is that of oak powdery mildew in Europe.
A consolidated effort is required to move from studies of interactions between individual species to those at the community level. Perhaps this can be achieved by the network approach proposed by
There are numerous examples of successful eradication of plant pathogens from man-made settings, particularly in controlled environments such as greenhouses (
The examples of the fire blight and pitch canker diseases were of pathogens well-known elsewhere in the world. Consequently, they were relatively easily recognised when they first appeared and techniques and tools for identification were well-established, facilitating rapid diagnostics. This is very different in the case of tree diseases of unknown cause such as pine wilt caused by the pine wood nematode (Bursaphelenchus xylophilus), or sudden oak death caused by P. ramorum; both took many years, in the former case decades, before the causal agents became known (
There are many examples of IFPs that were not known to cause disease, and others even unknown to science, prior to their establishment in a novel environment (
The paucity of knowledge for many aspects of microorganisms has presented challenges to understanding them as IASs, and has likely led to their underrepresentation in the invasion science literature. Advances in molecular techniques have provided powerful tools with which to study IFPs. This arises as techniques make it possible to identify pathogens more easily and accurately, greatly enhancing our knowledge of these organisms and their biogeography and ecology.
Technologies are advancing rapidly, and are commonly ahead of available knowledge of the pathogen systems being studied. Consequently, there is a risk for incorrect assumptions to be made due to poor sampling strategies (
Trees live for very long periods and can be exposed to pathogens over their lifespan. They establish complex interactions among both beneficial and detrimental microorganisms including those that make up their microbiomes (
Invasions by pathogens into forest ecosystems lead to the decline and loss of keystone species, resulting in irreversible impacts. By not using the terminology of invasion science, and by remaining disconnected from the frameworks developed and used to study biological invasions, much of the work of forest pathologists has been ignored by the wider invasion science community. Aligning terminologies and experimental designs with those utilised by invasion scientists will allow forest pathologists to reach a larger audience, in turn generating opportunities for collaboration.
For well-studied pathosystems, forest pathologists have a deep understanding of the biology of the organisms they work with. This adds layers of complexity, but also allows for more nuanced explanations. The disease triangle is a central component of plant pathology, illustrating the interactions between a host, a pathogen, and an environment – the three key aspects determining the extent to which disease will develop. This approach may also bring benefits to invasion ecology. For example,
Microorganisms are gaining greater attention in the field of invasion science. As noted by
There has been a recent call for pathologists and entomologists to work together in response to the rising threat to forests posed by invasive pests and pathogens (
Against this background, a unified framework inclusive of IFPs should be designed. This should incorporate the basis of existing frameworks but also acknowledge and accommodate their shortfalls. This approach will facilitate the establishment of a more inclusive and a truly unified framework in the future (
This paper emerged from a workshop on ‘Frameworks used in Invasion Science’ hosted by the DSI-NRF Centre of Excellence for Invasion Biology in Stellenbosch, South Africa, 11–13 November 2019, that was supported by the National Research Foundation of South Africa and Stellenbosch University. We thank the three reviewers, whose suggestions have enabled us to greatly improve the originally submitted manuscript.