Research Article |
Corresponding author: Laura Del Rio-Hortega ( laurarhbal@gmail.com ) Academic editor: Tiffany Knight
© 2022 Laura Del Rio-Hortega, Irene Martín-Forés, Isabel Castro, José M De Miguel, Belén Acosta-Gallo.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Del Rio-Hortega L, Martín-Forés I, Castro I, De Miguel JM, Acosta-Gallo B (2022) Network-based analysis reveals differences in plant assembly between the native and the invaded ranges. NeoBiota 72: 157-181. https://doi.org/10.3897/neobiota.72.72066
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Associated with the introduction of alien species in a new area, interactions with other native species within the recipient community occur, reshaping the original community and resulting in a unique assemblage. Yet, the differences in community assemblage between native and invaded ranges remain unclear. Mediterranean grasslands provide an excellent scenario to study community assembly following transcontinental naturalisation of plant species. Here, we compared the community resemblance of plant communities in Mediterranean grasslands from both the native (Spain) and invaded (Chile) ranges. We used a novel approach, based on network analysis applied to co-occurrence analysis in plant communities, allowing us to study the co-existence of native and alien species in central Chile. This useful methodology is presented as a step forward in invasion ecology studies and conservation strategies. We found that community structure differed between the native and the invaded range, with alien species displaying a higher number of connections and, therefore, acting as keystones to sustain the structure within the invaded community. Alien species acting like keystones within the Chilean grassland communities might exacerbate the threat posed by biological invasions for the native biodiversity assets. Controlling the spread of the alien species identified here as keystones should help managing potential invasion in surrounding areas. Network analyses is a free, easy-to-implement and straightforward visual tool that can be widely used to reveal shifts in native communities and elucidate the role of multiple invaders into communities.
Alien species, Chile, community assembly, co-occurrence, invasion ecology, Mediterranean grasslands, network analysis, Spain, transcontinental naturalisation
Associated with anthropogenic activities, human beings have drastically increased the flow of plant species amongst distant regions worldwide, overcoming major biogeographical barriers and enhancing invasion events (
Community assembly is a deterministic phenomenon in which a regional pool of species interacts to form local communities that are ultimately influenced by stochastic events, migration, dispersal, abiotic factors, biotic interactions and evolutionary and biogeographic processes (
Network analysis is a novel approach that has become a potent tool to study microbiology communities (
The dynamics and stability of complex networks are directly related to their structure, where not all the nodes, in this case corresponding to species, assume the same relevance. When nodes with high importance are subsequently removed, the network structure collapses faster than when random nodes are removed (
The Mediterranean-climate regions constitute an excellent scenario for assessing the questions of plant transcontinental naturalisations, as they share similar climatic conditions, but maintain considerable geographic distance amongst them (
Spatial patterns as a result of the co-existence between native and alien species in central Chile have recently been studied through null models by
This paper is part of a larger study in which we targeted all the steps of the naturalisation process. We targeted the flows of species introductions amongst the Mediterranean regions (
In this work, we carried out network-based analysis to compare community structure and species co-occurrence between plant communities in the native and invaded ranges. We hypothesised that the pool of species that co-exist in the native range, once they have naturalised, will become organised similarly within the invaded community. Therefore, here we: i) assess the similarity between the Chilean and Spanish communities by comparing their floristic composition and abundance, as well as how alien species associate with each other and with native species and ii) elucidate how the alien species pool has integrated and assembled with the native flora in the invaded range by applying network analysis.
The study area is located in the centre-west of Spain (40°13'N to 37°51'N and from 4°23'W to 7°02'W) and central Chile (32°35'S to 37°00'S and from 70°46'W to 72°35'W) (Fig.
The agrarian practices introduced in central Chile involved a significant flow of organisms between Spain and Chile with the implementation of agriculture and grazing practices. This flow has persisted over time, possibly taking place unintentionally associated with human transport (
Regarding abiotic conditions, both areas have mean annual temperatures ranging from 14.5 °C to 16.9 °C in Chile and from 13.1 °C to 17.0 °C in Spain. The total annual precipitation of the sites ranges from 468 to 1030 mm in Spain and from 303 to 1168 mm in Chile. The summer drought period, characteristic of Mediterranean-climate, is more intense in Chile than in Spain. Both systems have slightly acid soils from igneous or metamorphic rocks (
The data utilised in this paper have been obtained in the previous study by
A total of 262 species were identified between both countries (190 species appeared in Spain and 132 appeared in Chile) and classified into four groups: i) alien species, those native to Spain that have been naturalised in Chile (111 species); ii) Spain Spanish exclusive species, which includes native and alien non-Chilean species, which only occur in Spain (91 species); iii) Chilean native species, which are native to Chile and do not occur in Spain (55 species); iv) other species, those non-included species in the previous groups, which are Chilean native species that occur in Spain and native species to both countries (5 species). We did not include the group other species in the analysis, as the aim here was to compare alien species in both ranges. Hence, in this study, we have worked with three sets of species: alien species, Spanish exclusive species and Chilean native species.
The data obtained during the surveys were organised in two datasets: i) a presence-absence dataset that contained this information for every species in each of the 30 sites (15 sites per country) and ii) a dataset that included abundance information from 0 to 12 quadrants of each specie for all of the 30 sites.
To analyse the community resemblance between Spain (native range) and Chile (invaded range), we made a Non-metric Multidimensional Scaling (nMDS), based on the Bray-Curtis dissimilarity matrix with the abundance data of all species and only with alien species. To compare the species co-occurrence patterns between the native and invaded ranges, we followed the probabilistic model developed by
For the network analysis, we constructed four networks with the co-occurrence analysis results with all the species: one for each range and, within each range, one for each type of association (positive or negative). In network analysis terms, the species are considered nodes and the associations are considered edges. For each network, different parameters were calculated: density, “assortativity” coefficient and assortativity degree. Density represents the ratio between the number of connections existing in the network and the number of possible connections; it ranges from 0 to 1 and gives information on how interconnected the network is (in ecological theory, it is also known as connectivity). The assortativity coefficient measures the selective linking between nodes and ranges from -1 to +1. Positive assortativity values indicate that nodes of a certain species group connect to other nodes of the same species’ group (i.e. alien species, native species or Spanish exclusive species), while negative values indicate that nodes tend to connect with nodes of a different species group. The assortativity degree measures whether nodes with a high degree (i.e. level of connection to other nodes) connect to other nodes with a high degree, ranging from -1 to +1. Positive assortativity degree indicates well-connected nodes tend to connect with other well-connected nodes, whereas negative values indicate that well-connected nodes tend to connect to poorly connected nodes, giving information about the robustness of the network. Additionally, we calculated the betweenness score for each species in the network, which is defined by the number of paths through a node and gives information about the importance of the species in the community structure. In this sense, nodes with high values of betweenness connect areas of the network that otherwise would be unconnected, possibly acting as keystones (for more information see
We carried out all analysis with R software 3.6 version (
The nMDS analysis used to compare the resemblance between communities of each range showed a great differentiation between the native and the invaded ranges when taking into account all species (Fig.
NMDS results for the sampling sites. Community resemblance between Spain (native range) and Chile (invaded range) was studied through non-metric Multidimensional Scaling (nMDS), based on the Bray-Curtis dissimilarity matrix with the abundance data. The graphic representation for the 30 sites surveyed considers: a all the species and b the pool of alien species. Sites in the native range are represented with blue dots, while sites in the invaded range are in orange. A polygon has been outlined connecting the sites of each country to improve the visualisation.
Regarding the co-occurrence results (Table
Co-occurrence results for each range. Co-occurrence results of non-random associations for all species in Spain (native range), all species in Chile (invaded range), alien species in Spain and alien species in Chile.
Non-random associations | ||||
---|---|---|---|---|
Country | Species group | % | positive | negative |
Spain | All | 2.29 | 102 (54%) | 85 (46%) |
Chile | All | 4.84 | 90 (53%) | 80 (47%) |
Spain | Alien | 1.80 | 31 (57%) | 23 (43%) |
Chile | Alien | 6.76 | 57 (64%) | 32 (36%) |
After the co-occurrence analysis, we applied the network analysis to those results to analyse the four networks (i.e. Spanish positive and negative associations networks and Chilean positive and negative associations networks). The resultant co-occurrence network plots for positive interactions (Fig.
Visualisation of the co-occurrence network for both ranges. Green lines connect pairs of species that have a positive association. The numbers are the species ID and each of the three species types have a separate enumeration for each country (see Suppl. material
Focusing on the type of species involved in each network, in the native range, both Spanish exclusive and alien species were homogeneously intermingled in the large network, whereas only alien species aggregated in the small network and in pairs. Both native and alien species were present in the invaded area within the large network. On the other hand, Chilean native species remained mostly in the outer zone of the network, except for Carex bracteosa Schwein., Cicendia quadrangularis (Lam.) Griseb., Juncus pallescens Wahlenb. and Plantago firma Kunze ex Walp. (species 24, 32, 70 and 116, respectively in Fig.
The co-occurrences network plots for negative associations (Fig.
Visualisation of the co-occurrence network for both ranges.. Red lines connect pairs of species that have a negative association. The numbers are the species ID and each of the three types of species have a separate enumeration for each country (see Suppl. material
Focusing on the positive associations from the network analysis, the invaded range had superior values in the three calculated parameters (density, assortativity coefficient and assortativity degree), the assortativity coefficient values (3.5 times higher in the invaded range) being outstanding. Regarding the negative associations from the network analysis, the invaded range had a density value double that for the native range; however, the assortativity degree was 5.5 times lower. The assortativity coefficient of the invaded range stood out as the only negative value within the networks, indicating that nodes tend to connect with nodes of different type (Table
Network analysis results for each range and type of association (positive and negative).
Association sign | Range | Density | Assortativity coefficient | Assortativity degree |
---|---|---|---|---|
Positive | Native (Spain) | 0.04 | 0.06 | 0.06 |
Positive | Invaded (Chile) | 0.07 | 0.21 | 0.10 |
Negative | Native (Spain) | 0.03 | 0.01 | 0.11 |
Negative | Invaded (Chile) | 0.06 | -0.10 | 0.02 |
To obtain information on the importance of species in the community structure, the betweenness score was calculated. When observing the positive association network, in the native range, there are several species with betweenness values higher than 0.1, five of them are alien species and six are Spanish exclusive to Spain. In the invaded range, there are only three species, all of them alien. When looking at the negative association network, only three species are above 0.1 in both ranges. In the native range, these species are all Spanish exclusive to Spain, while in the invaded range, there are, once again, alien species.
Species with a betweenness score greater than 0.10 for each of the four networks. Note that the 0.1 score is an arbitrary cut-off point.
Positive association network in the native range (Spain) | ||||
ID | Species | Type | Betweenness score | Growth form |
149 | Romulea bulbocodium | Spain Spanish exclusive | 0.3347 | Geophyte |
117 | Moenchia erecta | Alien | 0.3330 | Terophyte |
127 | Parentucellia latifolia | Alien | 0.3315 | Terophyte |
190 | Trifolium tomentosum | Alien | 0.2633 | Terophyte |
35 | Carlina racemosa | Spain Spanish exclusive | 0.2513 | Terophyte |
124 | Ornithopus perpusillus | Spain Spanish exclusive | 0.2381 | Terophyte |
16 | Aphanes microcarpa | Spain Spanish exclusive | 0.1738 | Terophyte |
3 | Agrostis castellana | Alien | 0.1618 | Hemicryptophyte |
93 | Jasione montana | Spain Spanish exclusive | 0.1445 | Terophyte |
67 | Euphorbia exigua | Spain Spanish exclusive | 0.1410 | Terophyte |
125 | Ornithopus pinnatus | Alien | 0.1081 | Terophyte |
Positive association network in the invaded range (Chile) | ||||
ID | Species | Type | Betweenness score | |
108 | Petrorhagia prolifera | Alien | 0.1950 | Terophyte |
10 | Briza maxima | Alien | 0.1568 | Terophyte |
146 | Tolpis barbata | Alien | 0.1436 | Terophyte |
Negative association network in the native range (Spain) | ||||
ID | Species | Type | Betweenness score | |
93 | Jasione montana | Spain Spanish exclusive | 0.1904 | Terophyte |
16 | Aphanes microcarpa | Spain Spanish exclusive | 0.1467 | Terophyte |
35 | Carlina racemosa | Spain Spanish exclusive | 0.1170 | Terophyte |
Negative association network in the invaded range (Chile) | ||||
ID | Species | Type | Betweenness score | |
55 | Galium murale | Alien | 0.2405 | Terophyte |
4 | Anagallis arvensis | Alien | 0.2170 | Terophyte |
48 | Erodium botrys | Alien | 0.11901 | Terophyte |
Community assembly of Mediterranean herbaceous species differs between Spain and Chile with little resemblance amongst community structures in the native and invaded ranges. Regarding community structure in the invaded range, most of the species that establish non-random associations correspond to alien species, which surprisingly act as keystones within the community. In the invaded range, the assembled community has higher network connectivity. Moreover, alien species in the invaded area tend to assemble more amongst them displacing native species to the edges of the network.
Although there were more alien than native species in the invaded study area (
Our results showed that the associations of the alien species differed within the plant communities in both native and the invaded ranges. This suggests that the associations of alien species in the invaded area is an inherent property of being away from their native range, rather than a property of the species itself (
The network analysis applied to the co-occurrence patterns resulted in a visual output that revealed meaningful structural information (
Observing the network structure, in the native range, alien species integrate with the rest of the species in a large network, as the “alien” grouping in the native range is an artificial group that allows the comparison with the invaded range (see Figure
Preferences for associations that occur between species also vary between ranges and the results of the invaded area are striking. Only a group of species from the area of origin (Spain) has been able to remain in the invaded area (Chile) and naturalise (
The results of the network analysis are striking because when literature from other Mediterranean areas with the same source-invader relationship has compared the assemblage in terms of abundance, alien species assemble similarly in their source and recipient communities (
Concerning the species acting as keystones, alien species in the invaded range have an important role in the community structure. We expected Chilean native species would play a key role in Chilean communities, but our results suggest the opposite. In the invaded range, alien species showed the highest betweenness score, acting as a cornerstone for both positive and negative associations. In Chilean agroecosystems, eradication of alien species has not been a main management strategy (
Meanwhile, the alien species that play important roles in the invaded range do not do so in the native range. In the native range, a greater number of species were actively involved in shaping the network (i.e. displayed high betweenness), providing greater stability against disturbances, probably because these Spanish agro-ecosystems have been maintained over millennia (
Although it is questionable whether theoretical models can accurately predict assembly patterns and how environmental factors and land uses might alter the effects of species interactions on species co-occurrence (
Our novel methodology, proposed in this paper, improves our understanding of how the naturalisation process affects community assembly and structure. Network analyses are a free, easy-to-implement and straightforward visual tool that can be widely used in community ecology, to unravel assembly patterns, which would enable the prediction of changes in ecosystem structure and functioning under different changing scenarios. Similarly, in studies of invasion ecology, it allows revealing shifts in native communities and elucidates the role of multiple invaders into communities.
Thus, the identification of negative and positive associations, as well as elucidating which species act as keystones, is presented as a step forward in invasion ecology studies and as a tool to help designing restoration and conservation strategies in socioecological systems (
With this work, we have proved the utility of combining network analysis to co-occurrence analysis, as it has permitted the process of exploring complex sets of data and results in a very interesting way. Our results showed that the community assembly pattern differs between the native and the invaded ranges. Alien species that became naturalised in the invaded area re-assembled differently, tending to co-occur more amongst them and to avoid interaction with native species. Moreover, alien species acted like keystones in the communities of the invaded range. The key role displayed by alien species in Chilean communities could cause an invasional meltdown and threaten the native biodiversity. Conservation and managing strategies should focus on monitoring and controlling their potential spread and developing early detection strategies especially for the alien species identified as keystones.
Table S1. Species ID for each country and type of species
Data type: species data
Explanation note: Species ID for each country, type of species and relative abundance. Note that each species has a different ID in each range.