Research Article |
Corresponding author: Michel Frem ( mefrem@lari.gov.lb ) Academic editor: Uwe Starfinger
© 2020 Michel Frem, Daniel Chapman, Vincenzo Fucilli, Elia Choueiri, Maroun El Moujabber, Pierfederico La Notte, Franco Nigro.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Frem M, Chapman D, Fucilli V, Choueiri E, Moujabber ME, Notte PL, Nigro F (2020) Xylella fastidiosa invasion of new countries in Europe, the Middle East and North Africa: Ranking the potential exposure scenarios. NeoBiota 59: 77-97. https://doi.org/10.3897/neobiota.59.53208
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After the recent high-impact European outbreaks of Xylella fastidiosa (Xf), a xylem-limited plant pathogenic bacterium native to the Americas, this research aims to rank the risks of potential entry, establishment and spread of Xf in new countries across Europe, the Middle East and North Africa. A novel risk-ranking technique is developed, based on combining entry risk drivers (imported plants, direct flights and ferry connections) with risk factors related to establishment and spread (presence of potential insect vectors, vulnerable economic crops, alternative hosts and climate suitability) of this pathogen. This reveals that western European countries have the highest risk for entry, but that the Mediterranean basin runs the highest risk for establishment and spread of Xf. Lebanon in particular has the highest level of risk for Xf dispersal within its suitable territory. Countries without current outbreaks combining high risks of Xf arrival and establishment are mainly in the Mediterranean basin: Turkey is at the highest level of risk, followed by Greece, Morocco and Tunisia, which are ranked at the high level. The ranking model also confirms the vulnerability, in terms of invasion by Xf, of southern European countries (Italy, Portugal and Spain) in which the pathogen has already been reported. High summer temperatures in these southern countries are likely to be the significant determinant for the overall invasion process, while northern European countries have a high level risk for the arrival of the pathogen, but relatively low summer temperatures may limit establishment and spread of major outbreaks. In general, our study provides a useful approach for mapping and comparing risks of invasive non-native species and emerging pathogens between countries, which could be useful for regional horizon scanning and phytosanitary and biosecurity management.
alien species, biological invasion, entry, dispersal, plant bacterium, risk drivers
Global trade networks are implicated in increasing rates of global spread of plant diseases through transport of live plants and other plant-related products (
Following detection of Xf outbreaks in Europe, the EU and some Middle East and North African (MENA) countries have implemented several risk reduction options to combat this plant disease and prevent its entry and spread. Despite these actions, there remains a risk that Xf will continue to spread to new countries and regions through the movement of infected host plants (asymptomatic or unknown hosts) or via unintentional transport of insect vectors through equipment as a commodity contaminant or vehicle “hitchhiker”. This transport risk is likely to be highest in countries with well-developed transport links to current outbreak areas (
As such, we aimed to rank the likelihood of potential invasion by Xf of new countries in these regions, and to provide an overall risk rating by combining rankings for entry, establishment and spread in order to assess each country’s overall vulnerability to Xf invasion. Over the past 20 years, there have been several model frameworks and studies of alien species risk assessment at an individual-country scale. These include invasive alien species risk assessment in Great Britain (
Concerning Xf, the few published studies that have performed risk assessment for this biological invader are limited to one country (
Fifty six countries were selected for this study as shown in Figure
The vulnerability of a target country to the entry of Xf was assessed via six key risk drivers related to entry (importation of plants for planting, direct air flights and ferry traffic from countries source of Xf) and four risk drivers related to the establishment and spread of the bacterium (potential Xf vectors, vulnerable crops, alternative hosts from the forestry and ornamental sectors, and the suitability of summer temperatures) as summarized in Table
Risk drivers used to assess overall Xylella fastidiosa invasion risk and their weights.
Category | Code and description of the risk driver |
---|---|
Entry (plant trade) | ENT1 Live plant imports from three EU countries with major outbreaks (ESP, FRA, ITA). |
ENT2 Live plant imports from non-EU countries in which Xf is present but from which the bacterium has not been intercepted in Europe (ARG, CAN, IRN, PRY, TWN, and VEN). | |
ENT3 Live plant imports from non-EU countries in which Xf is present and from which the bacterium has been intercepted in Europe (BRA, CRI, ECU, HND, MEX and USA). | |
Entry (human movement) | ENT4 Number of direct airline routes from or near outbreak regions in the EU (ESP, FRA and ITA). |
ENT5 Number of direct airline routes from non-EU countries in which Xf is present (ARG, BRA, CAN, CRI, ECU, HND, IRN, PRY, MEX, TWN, USA and VEN). | |
ENT6 Number of annual ferry sailings from ports in or near outbreak regions in the EU (ESP, FRA and ITA) and from non-EU countries in which Xf is present (ARG, BRA, CAN, CRI, ECU, HND, IRN, PRY, MEX, TWN, USA and VEN). | |
Establishment and spread (vectors) | EST1 Presence of at least one known or potential Xf insect-vector. |
Establishment and spread (host plants) | EST2 Proportion of agricultural area growing susceptible crops. |
EST3 Proportion covers of forest. | |
Establishment and spread (climate) | EST4 Mean relative Xf growth potential in vulnerable habitats, based on summer mean temperature. |
As an indicator of the entry risk from plant trade we obtained data on import volumes of Plants for Planting from potential Xf source countries between 2000 and 2016 from the Resource Trade Earth database (https://resourcetrade.earth/data) and from the Taiwanese Bureau of Foreign Trade (https://cus93.trade.gov.tw) (Suppl. material
Intentional or unintentional human movement of contaminated plant material or insect-vectors may also lead to new introductions of Xf. To quantify the entry risk from human movement through international air travel, we calculated the number of annual direct airline flights from the airports in or near to outbreaks areas in Europe (specifically demarcated zones in ESP, FRA and ITA) and from non-EU countries in which Xf is present (ARG, BRA, CAN, CRI, ECU, HND, IRN, PRY, MEX, TW, USA, VEN). Flight data were extracted from the OpenFlights database (https://www.openflights.com) which covers all flights in 2014. Entry risk from ferry traffic was evaluated using the number of annual passenger ferry sailings from ports in or near the outbreak areas in Europe and from the same infected non-EU countries. Ferry data were extracted from scheduled sailings in 2018 listed by Ferry Lines (https://www.ferrylines.com). We initially considered including road network connectivity as a risk factor, but decided against it because the relatively small outbreak areas in Europe are far by road from other uninfected countries.
Since Xf is entirely insect-transmitted, presence of potential vectors was considered an indicator of risk of establishment and spread. Disease transmission occurs by xylem-feeding insect vectors, mainly via spittlebugs in Europe. In the Apulia region of southern Italy, the spittlebug Philaenus spumarius (L.: Superfamily Cercopoidea, Family Aphrophoridae) is considered to play the major role in transmitting Xf subspecies pauca (
Establishment and spread also requires presence of Xf host plants. This risk indicator was estimated from the cultivated areas of its main vulnerable economic hosts (i.e. almonds with shell, apricots, blueberries, cherries, sour cherries, green coffee, citrus fruit nes, stone fruit stone nes, grapefruits including pomelos, grapes, olives, oranges, peaches and nectarines, pears, plums and sloes). Production data for 2000–2015 were obtained from the FAOSTAT database (http://www.fao.org/faostat/en/) and converted into the proportion of the total agricultural area of each country containing vulnerable crops. In addition, we obtained the proportion of the total area of each target country covered by forest, from the same source, as an indicator of alternative host plants for Xf, which is capable of infecting tree species from genera including Quercus, Acer, and Ulmus.
Risk from climate suitability was assessed based on summer land surface temperatures, obtained from two regional gridded layers deriving the mean temperature of the warmest quarter (Bio10) from MODIS satellite data. Europe was covered by the EuroLST layer at 250 m resolution from MOD11A1 V005 daily temperatures, re-projected to a 0.05 degree long-lat grid (
We developed a structured system that ranks nations according to their risk of Xf invasion, combining the above risk drivers that constitute the components of the biological invasion process (Fig.
Overview of the invasion process of Xylella fastidiosa into a new country, based on the general framework of
Martix for combining entry risk with establishment and spread risk to form an overall assessment of vulnerability to Xf invasion, based on
Variables in the analysis (risk driver data) were weighted based on their relative loadings or importance for the first two axes of a factor analysis (Table
Rotated loadings of the risk drivers on two factor analysis axes, showing the contribution of each risk factor. See Table
Risk driver code | Factor 1 loading | Factor 2 loading | Entry risk weight | Establishment and spread risk weight |
---|---|---|---|---|
ENT1 | 0.863 | 0.236 | 20% | |
ENT2 | 0.825 | -0.258 | 19% | |
ENT3 | 0.815 | -0.114 | 19% | |
ENT4 | 0.778 | -0.074 | 18% | |
ENT5 | 0.750 | -0.442 | 17% | |
ENT6 | 0.308 | 0.195 | 7% | |
EST1 | 0.366 | 0.703 | 25% | |
EST2 | -0.026 | 0.825 | 29% | |
EST3 | 0.351 | 0.462 | 16% | |
EST4 | 0.039 | 0.842 | 30% |
The risk indicators used in the ranking are shown in Figure
Maps of the risk indicators used for ranking potential for Xf entry (ENT) and establishment and spread (EST) as described in Table
The loadings table (Table
Figure
Figure
Rank categorization of Europe and MENA countries according to the four establishments and spread risk drivers of Xylella fastidiosa in relation to vectors, vulnerable economical crops, alternative hosts and climate suitability.
In the MENA region, Lebanon is the only country at the highest level of risk, followed by Morocco, Tunisia, Egypt, Israel and State of Palestine which are classified at high risk level. Algeria, Jordan and Syria are ranked at the medium level risk, while the remaining MENA countries are at least risk rank for Xf establishment and spread. In Europe, Albania, Cyprus, Greece, Italy, Macedonia, Malta, Portugal, Serbia, Spain and Turkey are classified at highest risk level, while Iceland, Ireland and Norway are at least risk level.
When we combined the risk rankings for entry (Fig.
The threat of intentional or unintentional species movements leading to the entry and spread of invasive alien organisms is increased by international trade and travel (
In particular our analysis identified a contrast between entry risk and the risk of establishment and spread. This was clearly seen in the factor analysis loadings, in which entry risk drivers loaded strongly on axis 1, while establishment and spread risk drivers loaded strongly on axis 2. Based on this, countries in western Europe and also Turkey tended to score highly for entry risk, principally because they import greater volumes of plants from infected countries in Europe and globally and had greater numbers of direct flight connections originating in infected regions. By contrast, risk of establishment and spread was ranked mostly based on the degree to which crops grown in a country are known to be susceptible to Xf and whether the summer temperature was apparently well suited to Xf colony growth. Presence of vectors was also weighted strongly in the factor analysis, but did not have a big influence on the results since nearly all countries had at least one potential vector species recorded as present (Fig.
Consequently, few countries were ranked very highly for both entry risk and establishment. Of those that were, three countries already have major Xf outbreaks, namely Italy, Spain and Portugal, whose outbreak was discovered after this study was conducted. Greece and Turkey were also ranked in the highest risk group but so far remain disease free.
Our findings are broadly consistent with other risk assessment studies for Xf in Europe and MENA region. For example, data-driven species distribution modelling studies using a wider range of climate variables than we assessed generally confirm our simple mapping of temperature risk (
Important limitations of this study include its country-level resolution, reliance on data of differing quality, missing risk factors with insufficient data to include and uncertainty about how to combine risk factors into overall risks. As discussed above, the country-level resolution of the analysis affected results for countries that appear largely unsuitable for Xf, but have small areas that are at high risk, such as France. Future approaches could use high resolution gridded data on the risk drivers to try to map risk at a higher resolution, addressing this problem. One reason that we were limited to a country-level analysis was that some datasets were only available at that resolution. Notably international trade data is only available for countries and vector distributions are too poorly mapped to allow regional breakdowns. As plant trade is the major pathways of Xf introduction, there seems little prospect of mapping entry risk at higher resolutions. However, availability of gridded climate and land use data (see Suppl. material
Due to lack of adequate data across Europe and the MENA region we did not feel able to include some other potentially relevant risk drivers. Individual host plant species (other than major crops) and insect vector distributions were not mapped well enough to consider. We also did not consider variation in risk for different subspecies of Xf, of which at least three are present in Europe and the MENA (Xf subsp. pauca, multiplex and fastidiosa) and all differ in host plant range and temperature-growth responses (European Food Safety Authority 2019). In addition, lack of information meant our the analysis did not account for variation in management regimes in different countries, including farmers’ cultural management (i.e. crop genetics, use of resistance/tolerant cultivars, presence of transgenic plants, vegetation, vector control etc.), surveillance and monitoring programs, or phytosanitary regulations at the import stage or testing capacity. However, with more complete data the present ranking model could be extended to include additional risk indicators.
The results of this type of study can also be sensitive to how risk indicators are combined. We suggest that our use of factor analysis to weight additive risk combination ensured that our individual risk rankings for entry and establishment and spread followed the major gradients in the assessed drivers of those risks. In addition, we explored alternative schemes, including multiplicative risk combinations, and found these produced qualitatively similar results. In addition, we used an established matrix to combine both types of risk (Fig.
Regional risk assessment for high-impact invasive alien species such as Xf requires approaches that incorporate multiple risk drivers to simultaneously rank countries for multiple stages of invasion, such as the approach developed here. The world is increasingly connected by international plant trade and human travel, which are potential drivers of Xf entry into new areas where the presence of insect vectors, the abundance of host-plants as well as the climate suitability play an important role for its dispersal. As such our approach could be useful for both individual countries to understand their risk of Xf relative to other countries, and if applied across many different pests it could be useful to identify priority species. It is also useful for supra-national organizations interested in Plant Health (i.e. EPPO, EFSA, and EU) who can use country-level risk rankings to prioritize phytosanitary resources among countries. In this context, the strength of this study is that it creates a tool for mapping, ranking and combining multiple sources of invasion risk at country-level.
Overall, we identified the most vulnerable new countries to Xf invasion are mainly located in the Mediterranean basin, particularly Turkey, Greece, Morocco and Tunisia. As such, this research provides important information in terms of potential exposure by Xf, for policy makers or stakeholders in high risk countries where Xf has not yet been reported. We suggest that these countries and other ranked with relatively high risk should conduct detailed individual risk analysis, take preventive measures, and if necessary, improve their surveillance systems for early Xf detection in plants and insect-vectors, and raise awareness to prevent socio-economic and ecological impacts on their ecosystems. In addition, our approach could be adapted to assess the specific risks for other important invasive alien species, irrespective of their origin, potential area of invasion and whether or not they have already invaded parts of the risk assessment region. As such, it provides a useful addition to tools and methods more commonly applied in regional-scale risk assessment for invasive alien species.
Michel Frem thanks the UK Centre for Ecology and Hydrology, CIHEAM Bari (Italy) and UNIBA Aldo Moro Bari (Italy) for their hospitality, bibliography, data collection and treatment. Thanks also to Sarah Jane Christopher of UNIBA Aldo Moro Bari (Italy) for her careful revision of the Manuscript. This research was supported by CURE-Xf, an EU-funded project, coordinated by CIHEAM Bari (H2020-Marie Sklodowska-Curie Actions – Research and Innovation Staff Exchange. Reference number: 634353).
Figures S1, S2
Data type: measurement
Explanation note: To map gradients of Xylella fastidiosa relative climate suitability in Europe and Middle East and North Africa countries.
Table S1
Data type: measurement
Explanation note: Importation of plants for planting from countries, source of Xylella fastidiosa.
Table S2
Data type: measurement
Explanation note: Correlation matrix of the ranking model.
Table S3
Data type: measurement
Explanation note: Rank categorization of European and Middle East and North Africa countries according to exposure to invasion by Xylella fastidiosa and classified from the highest to the least overall risk rank.
Table S4
Data type: occurrence
Explanation note: The known world distribution of Xylella fastidiosa.